{"id":"W3013129654","doi":"10.1128/mra.00016-20","title":"Near-Complete Genome Sequence of an H5N1 Avian Influenza Virus Strain Isolated from a Swan in Southwest Kazakhstan in 2006","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute for Biological Sciences","funders":"Ministry of Education and Science of the Republic of Kazakhstan","keywords":"Influenza A virus subtype H5N1; Clade; Strain (injury); Phylogenetic tree; Whole genome sequencing; Virology; Virus; Biology; Avian influenza virus; Genome; Phylogenetics; Sequence (biology); Influenza A virus; Gene; Genetics; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001618505,0.0003703539,0.0004187502,0.0008560916,0.0005954989,0.0002770371,0.000288052,0.0003321211,0.002284104],"category_scores_gemma":[0.0002523503,0.0001335351,0.0003945694,0.001178697,0.0001495481,0.0002086086,0.0002133006,0.0005764334,0.001282619],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003848499,"about_ca_system_score_gemma":0.0008318337,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01035444,"about_ca_topic_score_gemma":0.01566863,"domain_scores_codex":[0.9998697,0.00001159351,0.00001691417,0.00003698759,0.00004267313,0.00002209418],"domain_scores_gemma":[0.999744,0.00003481178,0.00006379131,0.00002074207,0.00008049102,0.00005625925],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001495766,0.0002495023,0.03813554,0.001124763,0.0001243164,0.002282954,0.001165962,0.00121972,0.9032084,0.0002673534,0.009153767,0.04157187],"study_design_scores_gemma":[0.00007193679,0.0007281173,0.8289704,0.0001280446,0.0002404717,0.002723898,0.0009706142,0.0007991666,0.04034811,0.0001818435,0.1247731,0.00006422982],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7795324,0.00334733,0.0040726,0.0004519952,0.0002968008,0.0001435052,0.2080432,0.0002483421,0.003863733],"genre_scores_gemma":[0.3656333,0.002947693,0.02174787,0.0003699592,0.0001360825,0.0001042574,0.6021881,0.0001007119,0.006772109],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01035444,"threshold_uncertainty_score":0.02058834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09540562158172149,"score_gpt":0.3392992778870261,"score_spread":0.2438936563053046,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}