{"id":"W3013210981","doi":"10.1128/mra.00091-20","title":"Whole-Genome Sequencing of Salmonella enterica Serovar Infantis and Kentucky Isolates Obtained from Layer Poultry Farms in Ecuador","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Universidad Técnica de Ambato","keywords":"Salmonella enterica; Serotype; Biology; Genome; Salmonella; Microbiology; Gene; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002510398,0.0002723038,0.0005807551,0.00002795304,0.0000879186,0.00002002782,0.0003681167,0.0002625301,0.000180906],"category_scores_gemma":[0.00007603745,0.0001357975,0.00008948126,0.0003195911,0.0001787689,0.00006798111,0.0002804041,0.0002286007,0.00004609004],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004210876,"about_ca_system_score_gemma":0.00001131114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006619811,"about_ca_topic_score_gemma":0.00005302203,"domain_scores_codex":[0.9979041,0.00030335,0.0006050435,0.0006422318,0.00005587564,0.0004894203],"domain_scores_gemma":[0.9992849,0.0001868855,0.0002583506,0.00009924841,0.00004649235,0.0001241056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001308259,0.00002968831,0.3116226,0.000007729308,0.00003950439,0.00001192447,0.0004236232,0.000006771327,0.6863856,8.463195e-7,0.0002415049,0.001099436],"study_design_scores_gemma":[0.002687622,0.002221749,0.4683239,0.0001816039,0.00009813164,0.00008229099,0.01023056,0.00017106,0.01802889,0.0002909523,0.496381,0.001302238],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994723,0.0008841843,0.00000411711,0.002129638,0.00005076926,0.000237851,0.001742214,0.00004077729,0.000187515],"genre_scores_gemma":[0.9928131,0.0001393236,0.000125169,0.003690455,0.0001217548,0.000008457303,0.003036317,0.00000323846,0.00006224181],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6683567,"threshold_uncertainty_score":0.553766,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02823586293788948,"score_gpt":0.2194429955384682,"score_spread":0.1912071326005787,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}