{"id":"W3013494640","doi":"10.1099/mgen.0.000348","title":"Two cases of type-a Haemophilus influenzae meningitis within the same week in the same hospital are phylogenetically unrelated but recently exchanged capsule genes","year":2020,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research; Canada Research Chairs","keywords":"Haemophilus influenzae; Meningitis; Haemophilus; Microbiology; Gene; Capsule; Medicine; Biology; Genetics; Pediatrics; Bacteria; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002269717,0.001190679,0.000528852,0.00106107,0.001418069,0.0009533946,0.0008873372,0.002318065,0.001517735],"category_scores_gemma":[0.001578054,0.0007845004,0.0008678318,0.0006034827,0.001022823,0.0009230896,0.001098566,0.001744113,0.0004036464],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001549156,"about_ca_system_score_gemma":0.0005398006,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00856441,"about_ca_topic_score_gemma":0.01173424,"domain_scores_codex":[0.9992492,0.0000757516,0.0000916638,0.0002764427,0.00008696342,0.0002199242],"domain_scores_gemma":[0.9987389,0.0001688973,0.0004231028,0.0001072619,0.0001107646,0.0004510316],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003821869,0.0003471282,0.5922717,0.0001336494,0.0001391138,0.3889045,0.003669875,0.0002042033,0.005148106,0.000281536,0.001610079,0.006907947],"study_design_scores_gemma":[0.00006193554,0.0005651762,0.3387997,0.0001080186,0.00008380519,0.6499177,0.003658141,0.0003916335,0.00250423,0.0001522229,0.003689957,0.00006747062],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961279,0.0003913798,0.0005016711,0.0005285157,0.0001039829,0.00007897103,0.0002005274,0.0000271731,0.002039877],"genre_scores_gemma":[0.998257,0.0002644483,0.0004008636,0.0002841684,0.0001015089,0.00001723359,0.000252667,0.000008251223,0.0004138997],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00856441,"threshold_uncertainty_score":0.01702911,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02736911642500804,"score_gpt":0.2377873469794396,"score_spread":0.2104182305544315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}