{"id":"W3013934097","doi":"10.1128/mra.00033-20","title":"Complete Genome Sequence of Acidithiobacillus ferridurans JAGS, Isolated from Acidic Mine Drainage","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Metal Extraction and Bioleaching","field":"Engineering","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta; University of Toronto","funders":"Office of Energy Efficiency; Office of Energy Efficiency and Renewable Energy; Lawrence Livermore National Laboratory; Ontario Research Foundation; U.S. Department of Energy","keywords":"GC-content; Whole genome sequencing; Genome; Gene; Acidithiobacillus ferrooxidans; Sequence (biology); Biology; Computational biology; Chemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001246108,0.000260496,0.0004012673,0.00006576336,0.00008461349,0.00001883772,0.0003540851,0.0001732164,0.0003783309],"category_scores_gemma":[0.00002631739,0.000246491,0.0001022338,0.0002296483,0.0001665813,0.00008016191,0.00008078234,0.0003620061,0.0002479575],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005599663,"about_ca_system_score_gemma":0.00001436078,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007249483,"about_ca_topic_score_gemma":0.00001563915,"domain_scores_codex":[0.9986649,0.0000963794,0.0004635345,0.0003416065,0.00007970805,0.0003538666],"domain_scores_gemma":[0.9994585,0.00003516463,0.0001104166,0.000238013,0.00004130641,0.0001166038],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006888017,0.00002145062,0.0002371522,0.00004051967,0.0001687842,0.00001729979,0.0007475257,0.00101816,0.9963394,0.000008207155,0.0008350493,0.0004976121],"study_design_scores_gemma":[0.001004561,0.0002135489,0.0001918999,0.00004800983,0.00005287269,0.00002773998,0.0004330141,0.004974199,0.007453815,0.0000126085,0.9851795,0.0004081596],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9710173,0.001687046,0.006501,0.000896876,0.0004670732,0.0004426069,0.01458025,0.000426307,0.003981524],"genre_scores_gemma":[0.9900088,0.00005599653,0.000390447,0.00116842,0.0001166474,0.000006745168,0.008007275,0.00003360644,0.0002120505],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9888855,"threshold_uncertainty_score":0.9999987,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03549783532951328,"score_gpt":0.2258298419073427,"score_spread":0.1903320065778294,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}