{"id":"W3014219950","doi":"10.1128/aem.00354-20","title":"Custom Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometric Database for Identification of Environmental Isolates of the Genus <i>Burkholderia</i> and Related Genera","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Simon Fraser University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Burkholderia; Metagenomics; Biology; Mass spectrometry; Isolation (microbiology); Pseudomonas; Microbiology; Computational biology; Bacteria; Chemistry; Chromatography; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008194392,0.0001121004,0.0002118325,0.00001351018,0.00007879143,0.000004106862,0.0001012956,0.00008577215,0.00008392875],"category_scores_gemma":[0.000006377632,0.00005308122,0.000044459,0.0001199622,0.0002363253,0.0000340897,0.0001153901,0.00004121428,0.000004654431],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001347628,"about_ca_system_score_gemma":0.0000015832,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002496751,"about_ca_topic_score_gemma":9.378338e-7,"domain_scores_codex":[0.999247,0.00003799719,0.0003294114,0.0002395591,0.00003483432,0.0001111852],"domain_scores_gemma":[0.9995673,0.00007267372,0.0002774581,0.00005196966,0.000002534571,0.00002803391],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005178364,0.00005690277,0.002238493,0.00001724879,0.00003992674,1.137278e-7,0.0000731633,0.000004276792,0.9963024,0.00001689066,0.00003536903,0.001163387],"study_design_scores_gemma":[0.0004070512,0.0001239219,0.1108279,0.000005201358,0.00007965228,0.00001788611,0.0001733819,0.00007903716,0.8875898,0.00002586772,0.0005617156,0.0001085852],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995631,0.0005609229,0.00001908783,0.000135835,0.00002837338,0.0003371405,0.003274379,0.000005864977,0.000007362179],"genre_scores_gemma":[0.9980889,0.0004973176,0.0001685126,0.00003440962,0.00001776924,0.00001061239,0.001150781,0.000001857087,0.00002984854],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1087127,"threshold_uncertainty_score":0.2164589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00659374698729295,"score_gpt":0.1572952729704176,"score_spread":0.1507015259831247,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}