{"id":"W3014294147","doi":"10.1136/sextrans-2019-sti.196","title":"O16.4 Structural similarity of<i>treponema pallidum</i>protein Tp0225 with human toll-like receptor 2","year":2019,"lang":"en","type":"article","venue":"Oral Presentations","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Treponema; Leucine-rich repeat; Neisseria; Innate immune system; Biology; TLR2; Bacterial adhesin; Protein structure; Pathogen; Genetics; Gene; Computational biology; Syphilis; Receptor; Virology; Bacteria; Virulence; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00006273785,0.000167793,0.000331612,0.00008187914,0.0001034782,0.00002527236,0.00008421051,0.00006587837,0.002107203],"category_scores_gemma":[0.00002415467,0.0001212546,0.0001092271,0.0001938424,0.00008567679,0.0001411901,0.0000386112,0.0001267712,0.00008077302],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004380753,"about_ca_system_score_gemma":0.00006401103,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000596115,"about_ca_topic_score_gemma":0.0003630196,"domain_scores_codex":[0.9988276,0.00005385001,0.0002747481,0.0002893801,0.0003469811,0.0002074526],"domain_scores_gemma":[0.9991208,0.00005711492,0.000124425,0.0004329441,0.0001417797,0.000122885],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001879041,0.0005054405,0.9661906,0.0001224057,0.0003600036,0.00003252094,0.0005010008,0.00006696451,0.02308413,0.003105492,0.005001092,0.0008424408],"study_design_scores_gemma":[0.005993352,0.001440929,0.9315647,0.0002005743,0.0003758646,0.00003716652,0.0006862499,0.0001190726,0.05255771,0.0007047,0.005992394,0.000327262],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924885,0.0000799292,0.00001654267,0.001367415,0.0000998711,0.001122294,0.00007064295,0.00005220238,0.00470261],"genre_scores_gemma":[0.9934347,0.000005727212,0.002412359,0.0001376213,0.00006139177,0.00009762806,0.0002852278,0.00002375422,0.003541549],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03462588,"threshold_uncertainty_score":0.998805,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02903844033615901,"score_gpt":0.3232662337362731,"score_spread":0.2942277934001141,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}