{"id":"W3014303062","doi":"10.1099/jmm.0.001184","title":"Extracellular DNA controls expression of Pseudomonas aeruginosa genes involved in nutrient utilization, metal homeostasis, acid pH tolerance and virulence","year":2020,"lang":"en","type":"article","venue":"Journal of Medical Microbiology","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Athabasca University; University of Calgary","funders":"Cystic Fibrosis Canada","keywords":"Biofilm; Biology; Gene; Virulence; Pseudomonas aeruginosa; Microbiology; Transcriptome; Extracellular; DNA; Extracellular polymeric substance; Bacteria; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004352783,0.0001369848,0.0004211887,0.00004726104,0.00002622099,0.000008184173,0.0001999463,0.0003151158,0.00003881115],"category_scores_gemma":[0.0003443489,0.0001061962,0.00008815266,0.00008164255,0.0002196282,0.000008586268,0.0001132334,0.0001894328,6.840971e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007091917,"about_ca_system_score_gemma":0.0001159955,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005390838,"about_ca_topic_score_gemma":0.000006815789,"domain_scores_codex":[0.9986522,0.0001925345,0.0006301536,0.0002126252,0.0001218316,0.0001906093],"domain_scores_gemma":[0.9992061,0.00003165486,0.0003703625,0.00009760434,0.0001196638,0.000174569],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004509565,0.00007512198,0.0009257635,0.00003591194,0.00002730201,0.00003219363,0.00007795354,0.000003084185,0.9947478,0.00003488552,0.0002414226,0.003347561],"study_design_scores_gemma":[0.001884007,0.0004642908,0.0003003676,0.000113026,0.00001881306,0.0001535462,0.000100529,0.00003861714,0.9796463,0.000008940411,0.01716802,0.0001035929],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9616426,0.03492005,0.001332912,0.00177784,0.0002124438,0.00009200173,0.00001791672,0.000002019979,0.000002251845],"genre_scores_gemma":[0.9925237,0.00583062,0.0008481998,0.0004871135,0.0002703699,8.815182e-7,0.00002800793,0.000008718489,0.00000242488],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0308811,"threshold_uncertainty_score":0.4330555,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01723962494259197,"score_gpt":0.2460387008526234,"score_spread":0.2287990759100314,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}