{"id":"W3014714762","doi":"10.1099/ijsem.0.004108","title":"Fulvivirga aurantia sp. nov. and Xanthovirga aplysinae gen. nov., sp. nov., marine bacteria isolated from the sponge Aplysina fistularis, and emended description of the genus Fulvivirga","year":2020,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nautilus Biosciences (Canada); University of Prince Edward Island","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; 16S ribosomal RNA; Paraphyly; Sponge; Monophyly; Phylogenetic tree; Bacteria; Clade; Bacteroidetes; Genus; Type species; Microbiology; Taxonomy (biology); Zoology; Botany; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003338468,0.0002205105,0.0004570874,0.00004850313,0.0001370242,0.00004089071,0.0003853627,0.0001466555,0.00002661798],"category_scores_gemma":[0.000142838,0.0001404015,0.0001323924,0.00007007777,0.0003073153,0.00001001226,0.0004808956,0.0001519991,0.000001973247],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000261011,"about_ca_system_score_gemma":0.00006611236,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000774636,"about_ca_topic_score_gemma":0.00004206585,"domain_scores_codex":[0.998401,0.0002600234,0.0007797478,0.0002712151,0.0001246046,0.0001633903],"domain_scores_gemma":[0.9986225,0.00009599131,0.0006951634,0.0001852023,0.0003358849,0.00006522665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004136884,0.00005267196,0.03140729,0.0003285467,0.001103234,0.00000921941,0.0004208843,0.00001600014,0.9650094,0.0000820676,0.0009763503,0.0001806789],"study_design_scores_gemma":[0.006849716,0.001683795,0.9380533,0.002085751,0.001758186,0.006382397,0.003204454,0.001453776,0.02352677,0.00106295,0.01285948,0.001079501],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858383,0.01021418,0.0007810999,0.001969069,0.0006044008,0.0002985624,0.0002552464,0.000002046865,0.00003710662],"genre_scores_gemma":[0.9967348,0.001656048,0.000684672,0.0004552214,0.000340689,0.000005336069,0.00006398635,0.00001435415,0.0000448888],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9414826,"threshold_uncertainty_score":0.5725408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01379196786374794,"score_gpt":0.2049486041271814,"score_spread":0.1911566362634335,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}