{"id":"W3014857061","doi":"10.1186/s12920-020-0704-3","title":"E. coli diversity: low in colorectal cancer","year":2020,"lang":"en","type":"article","venue":"BMC Medical Genomics","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":18,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"National Natural Science Foundation of China","keywords":"Biology; Escherichia coli; Pulsed-field gel electrophoresis; Genotype; Microbiology; Commensalism; Genome; Host (biology); Genetics; Pathogenic Escherichia coli; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001676428,0.00008957115,0.0001372938,0.00001352403,0.00006889902,0.00000776328,0.000285015,0.0001294134,0.0001266719],"category_scores_gemma":[0.0008283024,0.00008671883,0.0000475769,0.00009303039,0.000133655,0.000001058635,0.001089895,0.0001538401,0.00001845815],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004056351,"about_ca_system_score_gemma":0.0005572489,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000104827,"about_ca_topic_score_gemma":0.001881379,"domain_scores_codex":[0.9990613,0.00006494348,0.0001218919,0.0002543005,0.0002507551,0.0002468451],"domain_scores_gemma":[0.9995604,0.00003668733,0.00002485947,0.0000753157,0.00003368032,0.0002690563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001206803,0.0002293247,0.5199592,0.0002986283,0.0001855932,0.0001111001,0.00124824,0.0003736284,0.4436077,0.0001295031,0.0275736,0.005076631],"study_design_scores_gemma":[0.01448407,0.002428273,0.4469176,0.0002099516,0.00009551379,0.00001926233,0.002465355,0.03529334,0.1894897,0.000191304,0.3061565,0.002249249],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9967772,0.0008011023,0.0003000984,0.001064057,0.00008190062,0.0001526138,0.00001547694,0.000008545362,0.0007989451],"genre_scores_gemma":[0.9953405,0.0018291,0.000354416,0.001925932,0.0004003318,0.00002766343,0.00001470105,0.00001137898,0.00009593004],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2785828,"threshold_uncertainty_score":0.3536291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02758347124608009,"score_gpt":0.284420012167905,"score_spread":0.256836540921825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}