{"id":"W3015299299","doi":"10.1136/bmjpo-2020-000651","title":"Fast I(n)dentification of Pathogens in Neonates (FINDPATH-N): protocol for a prospective pilot cohort study of next-generation sequencing for pathogen identification in neonates with suspected sepsis","year":2020,"lang":"en","type":"article","venue":"BMJ Paediatrics Open","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Thrombosis and Atherosclerosis Research Institute; McMaster University; McMaster Children's Hospital","funders":"Canadian Institutes of Health Research; Canadian Blood Services; McMaster University","keywords":"Sepsis; Medicine; Neonatal sepsis; Blood culture; Prospective cohort study; Biomarker; Intensive care medicine; Gold standard (test); Cohort; Intensive care; Pathogen; Internal medicine; Immunology; Biology; Microbiology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.03145841,0.002906942,0.0029466,0.001754828,0.003292261,0.001856963,0.003248748,0.003431836,0.05361013],"category_scores_gemma":[0.02337042,0.002458984,0.002266645,0.001545753,0.001693985,0.001824961,0.002685802,0.002614635,0.01437373],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002644828,"about_ca_system_score_gemma":0.01474876,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002842914,"about_ca_topic_score_gemma":0.003698831,"domain_scores_codex":[0.9868129,0.008224349,0.001843911,0.001384303,0.0008488777,0.0008856178],"domain_scores_gemma":[0.9841304,0.002861959,0.002403447,0.004185846,0.003917045,0.002501274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"randomized_trial","study_design_gemma":"not_applicable","study_design_scores_codex":[0.4030872,0.03209643,0.04377108,0.03441807,0.001702246,0.003070925,0.003658166,0.00732769,0.01429332,0.01237508,0.2366558,0.207544],"study_design_scores_gemma":[0.2390818,0.126811,0.1139628,0.02104033,0.001415113,0.002067209,0.002493951,0.00785048,0.01008281,0.01246677,0.4615887,0.001139011],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"protocol","genre_gemma":"protocol","genre_scores_codex":[0.005658392,0.0002205654,0.006339508,0.0002943171,0.0002562835,0.9795694,0.00571345,0.0002068172,0.001741317],"genre_scores_gemma":[0.001954705,0.00007287446,0.004233616,0.0001394917,0.00003030954,0.9925655,0.0006802286,0.00001038612,0.0003128497],"genre_candidate":"protocol","genre_consensus":"protocol","teacher_disagreement_score":0.05361013,"threshold_uncertainty_score":0.1793438,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1377972216063379,"score_gpt":0.3684110556918528,"score_spread":0.2306138340855149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}