{"id":"W3015335844","doi":"10.1093/cid/ciaa420","title":"Molecular Epidemiology of <i>Mycobacterium tuberculosis</i> To Describe the Transmission Dynamics Among Inuit Residing in Iqaluit Nunavut Using Whole-Genome Sequencing","year":2020,"lang":"en","type":"article","venue":"Clinical Infectious Diseases","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Agency of Canada; Nunavut Research Institute; Government of Nunavut; Public Health Ontario; McGill University Health Centre; University of Manitoba; Ottawa Hospital; University of Ottawa","funders":"Canadian Institutes of Health Research; Ottawa Hospital","keywords":"Transmission (telecommunications); Tuberculosis; Mycobacterium tuberculosis; Cluster (spacecraft); Epidemiology; Arctic; Mycobacterium tuberculosis complex; Whole genome sequencing; Single-nucleotide polymorphism; Demography; Geography; Biology; Genome; Medicine; Genetics; Genotype; Ecology; Pathology; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004392134,0.0003822127,0.0001871698,0.001244001,0.0007156818,0.0008458453,0.0006196396,0.0002793459,0.0004872922],"category_scores_gemma":[0.001054266,0.0001086504,0.0002145039,0.001484263,0.0002336711,0.0002350679,0.0003444164,0.0002429438,0.00008251809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002549731,"about_ca_system_score_gemma":0.001659477,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5617145,"about_ca_topic_score_gemma":0.6227903,"domain_scores_codex":[0.999715,0.0000446691,0.00002099817,0.00008548959,0.00005217498,0.00008165304],"domain_scores_gemma":[0.9995578,0.00003722411,0.0001835894,0.00002139654,0.0001518284,0.00004813585],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003388556,0.0000184671,0.9882874,0.00005694926,0.00005633562,0.0001415042,0.0007913614,0.0006068429,0.004319078,0.0001038596,0.000253471,0.005331003],"study_design_scores_gemma":[0.000001150732,0.00001857747,0.9952016,0.00004217212,0.00003185408,0.0001797227,0.001255521,0.002037047,0.0004574367,0.00004507749,0.0007249126,0.000004900136],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9960187,0.0006925479,0.001097927,0.00009658052,0.000005343022,0.00004043583,0.001131421,0.00001171672,0.0009053384],"genre_scores_gemma":[0.9976011,0.0001926257,0.001289957,0.00003680911,0.000002987722,0.00001334448,0.0006985113,0.000004501879,0.000160227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4382855,"threshold_uncertainty_score":0.8817332,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08739400289408764,"score_gpt":0.3839673399491121,"score_spread":0.2965733370550245,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}