{"id":"W3015361654","doi":"10.1093/molbev/msaa094","title":"Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense","year":2020,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; CpG site; Genome; Coronavirus; RNA; Virology; Viral evolution; Viral replication; Gene; Virus; Genetics; DNA methylation; Gene expression; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001899691,0.00008076656,0.0002399099,0.00008107819,0.00002575917,0.000001761461,0.00003245024,0.0001108272,0.00000270079],"category_scores_gemma":[0.0002293728,0.00007076124,0.000033871,0.0000902459,0.000232296,0.00002444703,0.00006818822,0.0001338703,0.000004124226],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002030882,"about_ca_system_score_gemma":0.00002357426,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009866439,"about_ca_topic_score_gemma":0.00002619156,"domain_scores_codex":[0.9991435,0.0001671323,0.0001902259,0.0002328454,0.00003827698,0.0002279608],"domain_scores_gemma":[0.9998041,0.00000943876,0.00003858865,0.00007196384,0.00002401769,0.00005186069],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003016304,0.00002022552,0.3032583,0.00003282108,0.000005623019,0.00002417169,0.00002642098,4.995931e-7,0.6949871,0.0006167764,0.00003930539,0.0006870468],"study_design_scores_gemma":[0.002019604,0.00242455,0.9665918,0.00005622735,0.00002280614,0.0001170647,0.00005423749,0.002182886,0.02484835,0.001392017,0.0001894558,0.0001010258],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9881498,0.002676368,0.007498243,0.001345845,0.00001897293,0.0001481011,0.000008361746,0.000009112521,0.0001451986],"genre_scores_gemma":[0.9985842,0.0002884221,0.0005446529,0.0005339734,0.00001652933,0.000005502496,0.00001959805,0.000005037579,0.000002118764],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6701388,"threshold_uncertainty_score":0.2885559,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04110324806621369,"score_gpt":0.3182629334981144,"score_spread":0.2771596854319007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}