{"id":"W3015361654","doi":"10.1093/molbev/msaa094","title":"Extreme Genomic CpG Deficiency in SARS-CoV-2 and Evasion of Host Antiviral Defense","year":2020,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":173,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Biology; CpG site; Genome; Coronavirus; RNA; Virology; Viral evolution; Viral replication; Gene; Virus; Genetics; DNA methylation; Gene expression; Coronavirus disease 2019 (COVID-19); Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001036313,0.0001861253,0.0002031236,0.0002914251,0.0001324885,0.0001871812,0.00008949532,0.0002904202,0.0006123147],"category_scores_gemma":[0.0001705319,0.0001105813,0.0001601584,0.0002030255,0.0001463704,0.0001352879,0.0001438098,0.0002391851,0.0001187413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001638833,"about_ca_system_score_gemma":0.000117711,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000519593,"about_ca_topic_score_gemma":0.0007242847,"domain_scores_codex":[0.9999197,0.00001083854,0.000007733911,0.00002085119,0.00002258373,0.0000183357],"domain_scores_gemma":[0.9999015,0.00001170544,0.00003797348,0.000007046959,0.00001616073,0.00002548029],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003051487,0.0000360386,0.04509017,0.00005234247,0.00001532679,0.0005143433,0.00004587598,0.00008197455,0.9501846,0.00007551468,0.00005199704,0.00354663],"study_design_scores_gemma":[0.00002203094,0.001112753,0.8054236,0.00001850367,0.0000439625,0.006289713,0.0004311386,0.0009520407,0.1821274,0.0003537213,0.003211552,0.00001363727],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987363,0.0004954861,0.0001973812,0.00002853372,0.000003801685,0.000005693588,0.00008004158,0.000005122873,0.0004476178],"genre_scores_gemma":[0.9986234,0.0002176292,0.0003444779,0.00005069432,0.000005703633,0.000004284419,0.0002990225,0.000002341979,0.0004523647],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006123147,"threshold_uncertainty_score":0.002048433,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04110324806621369,"score_gpt":0.3182629334981144,"score_spread":0.2771596854319007,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}