{"id":"W3015747860","doi":"10.1080/23802359.2020.1749165","title":"The complete plastome of the coccoid green alga <i>Jenufa minuta</i> (Chlorophyceae, <i>incertae sedis</i>) unveils a noncanonical genetic code and a previously unrecognized <i>trans</i>-spliced group II intron in the <i>rpl32</i> gene","year":2020,"lang":"en","type":"article","venue":"Mitochondrial DNA Part B","topic":"Algal biology and biofuel production","field":"Energy","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Biology; Incertae sedis; Intron; Group I catalytic intron; Gene; Chloroplast DNA; Plastid; Genetics; Genome; Group II intron; Mitochondrial DNA; Phylogenomics; Chloroplast; Phylogenetics; Botany; RNA splicing; Taxon; Clade; RNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004732731,0.0004741006,0.0006483355,0.0000380733,0.0007355607,0.00006938175,0.001082387,0.0003312231,0.00004431133],"category_scores_gemma":[0.0002050285,0.0002629307,0.00027109,0.0006087019,0.0009710061,0.0001173253,0.0003118993,0.0007126007,0.00002441758],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005652462,"about_ca_system_score_gemma":0.0001251814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00111925,"about_ca_topic_score_gemma":0.005778412,"domain_scores_codex":[0.9959741,0.001043352,0.0009474137,0.0008338052,0.0004709344,0.000730388],"domain_scores_gemma":[0.9980604,0.0005655469,0.0003709479,0.000746562,0.00009141435,0.0001651397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.004406087,0.0002517659,0.001014244,0.0001134174,0.0002209051,0.00001729857,0.003453727,0.000177479,0.9756238,0.0004134074,0.008190753,0.006117075],"study_design_scores_gemma":[0.009291972,0.002330641,0.00661421,0.0001325379,0.0004734045,0.0001460518,0.0002930454,0.0008405345,0.05134716,0.001101724,0.9264584,0.0009702871],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9781028,0.002157825,0.0001790514,0.01470827,0.001943226,0.002123239,0.000271937,0.00008801738,0.000425637],"genre_scores_gemma":[0.9905853,0.0006879981,0.0004065761,0.004960157,0.00269801,0.0003042186,0.0001188032,0.00005987189,0.000179023],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9242767,"threshold_uncertainty_score":0.9999823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01748365386558014,"score_gpt":0.2136490929033776,"score_spread":0.1961654390377974,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}