{"id":"W3015869129","doi":"10.1097/qad.0000000000002540","title":"Genetic variations in the host dependency factors ALCAM and TPST2 impact HIV-1 disease progression","year":2020,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Stichting Sanquin Bloedvoorziening; Universiteit van Amsterdam; Rijksinstituut voor Volksgezondheid en Milieu; Amsterdam University Medical Centers","keywords":"ALCAM; Single-nucleotide polymorphism; Biology; Pathogenesis; Immunology; Allele; Disease; Multicenter AIDS Cohort Study; Genetics; Genotype; Gene; Medicine; Viral disease; Human immunodeficiency virus (HIV); Internal medicine; Sida; Cell adhesion molecule","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005437796,0.0000853809,0.00008505538,0.00003526971,0.0001122054,0.00001855795,0.0001072513,0.00004695741,0.000338821],"category_scores_gemma":[0.00009578973,0.0000462678,0.00003894591,0.0001120734,0.00005841681,0.00004372333,0.00004521241,0.0001343507,0.0003415049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001504637,"about_ca_system_score_gemma":0.00006259549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006690706,"about_ca_topic_score_gemma":0.000008384537,"domain_scores_codex":[0.999346,0.0001790385,0.00008721749,0.0001513248,0.00003488238,0.0002016019],"domain_scores_gemma":[0.9996858,0.0001015719,0.00001936224,0.0001232725,0.00001095612,0.00005898461],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00007557088,0.0001357826,0.9857217,0.000006560434,0.00006317219,0.0000374746,0.001387052,0.000001198144,0.006496843,0.000102338,0.0005610098,0.005411306],"study_design_scores_gemma":[0.0006595783,0.0003718801,0.9972451,0.000007220912,0.00002507719,0.000004779478,0.0001500352,0.000007855968,0.000348728,0.00006904244,0.001056048,0.00005462566],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957005,0.002469702,0.00008261953,0.001094987,0.00002571242,0.0002844557,0.0001491985,0.00001676608,0.0001760274],"genre_scores_gemma":[0.999502,0.0001012657,0.00004407913,0.00008049032,0.00001294748,0.00003501386,0.000160599,0.000005144359,0.00005844486],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01152344,"threshold_uncertainty_score":0.4389468,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01847005298386624,"score_gpt":0.296453499410901,"score_spread":0.2779834464270348,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}