{"id":"W3015869129","doi":"10.1097/qad.0000000000002540","title":"Genetic variations in the host dependency factors ALCAM and TPST2 impact HIV-1 disease progression","year":2020,"lang":"en","type":"article","venue":"AIDS","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"Stichting Sanquin Bloedvoorziening; Universiteit van Amsterdam; Rijksinstituut voor Volksgezondheid en Milieu; Amsterdam University Medical Centers","keywords":"ALCAM; Single-nucleotide polymorphism; Biology; Pathogenesis; Immunology; Allele; Disease; Multicenter AIDS Cohort Study; Genetics; Genotype; Gene; Medicine; Viral disease; Human immunodeficiency virus (HIV); Internal medicine; Sida; Cell adhesion molecule","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003199223,0.0004704805,0.0002255972,0.000318956,0.0001876449,0.000476924,0.0002417656,0.0005097655,0.004595382],"category_scores_gemma":[0.0009341669,0.000154517,0.000330599,0.0003295823,0.000230485,0.000183177,0.0001853828,0.0004142149,0.0002080961],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001140187,"about_ca_system_score_gemma":0.0001098941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009227392,"about_ca_topic_score_gemma":0.0008060264,"domain_scores_codex":[0.9997264,0.00008666228,0.00002502619,0.00008475742,0.00004345651,0.00003367731],"domain_scores_gemma":[0.9994612,0.0002607472,0.0001454279,0.00003765563,0.00003178724,0.00006308543],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003367534,0.0001358588,0.8801268,0.0000716986,0.0005604368,0.001058183,0.0002346633,0.0008653345,0.1044069,0.000225298,0.0002720839,0.008675151],"study_design_scores_gemma":[0.00003966387,0.0002566301,0.9879209,0.00001528462,0.0002070787,0.001427701,0.00006888102,0.001919313,0.007516866,0.0001894518,0.000427092,0.00001112899],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992524,0.000209204,0.0001658431,0.00002220125,0.000004175957,0.000003300302,0.0001500314,0.000004883917,0.0001879229],"genre_scores_gemma":[0.999512,0.00004997094,0.0001344282,0.00001059173,0.00000741893,0.00000282615,0.0001007311,0.000003318169,0.0001787318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004595382,"threshold_uncertainty_score":0.01537305,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01847005298386624,"score_gpt":0.296453499410901,"score_spread":0.2779834464270348,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}