{"id":"W3015934849","doi":"10.1186/s13100-020-00209-9","title":"Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons","year":2020,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"Retrotransposon; Biology; Clade; Genome; Genetics; GC-content; Composition (language); Evolutionary biology; Host (biology); Transposition (logic); Gene; Transposable element; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00003753601,0.00006341908,0.0000740184,0.00001054652,0.00008487709,0.00001381235,0.00004637196,0.00004779332,0.000447656],"category_scores_gemma":[0.000008334799,0.0000331702,0.00002122154,0.0002852918,0.00002298778,0.0000852268,0.00002308354,0.00006575334,0.00001650995],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002561656,"about_ca_system_score_gemma":0.000006702197,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000195648,"about_ca_topic_score_gemma":0.0005098157,"domain_scores_codex":[0.9994435,0.00003593446,0.0001291212,0.0001925556,0.00009721273,0.0001016183],"domain_scores_gemma":[0.9998309,0.00006007094,0.00002377282,0.00001811869,0.00001775654,0.00004939012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005368054,0.0001552464,0.1897491,0.00001034973,0.000004451615,0.00000596314,0.0006658721,0.002541527,0.8035177,0.0004455303,0.00008907796,0.002761531],"study_design_scores_gemma":[0.0001776408,0.000127901,0.9929191,0.00001109865,0.000003349348,0.000001749963,0.0001223196,0.005028904,0.0005187066,0.0007916648,0.0002199181,0.00007762927],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968824,0.00008284837,0.00007279016,0.002540271,0.00005038319,0.0001927457,0.00006341795,0.00001728566,0.00009783557],"genre_scores_gemma":[0.9993872,0.00003015916,0.000108247,0.0001946855,0.00008981854,0.00004986391,0.0001271244,4.382733e-7,0.0000124683],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.80317,"threshold_uncertainty_score":0.4901519,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01750749523279579,"score_gpt":0.1943863874664715,"score_spread":0.1768788922336758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}