{"id":"W3015934849","doi":"10.1186/s13100-020-00209-9","title":"Variation in base composition underlies functional and evolutionary divergence in non-LTR retrotransposons","year":2020,"lang":"en","type":"article","venue":"Mobile DNA","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"York University; New York University Abu Dhabi","keywords":"Retrotransposon; Biology; Clade; Genome; Genetics; GC-content; Composition (language); Evolutionary biology; Host (biology); Transposition (logic); Gene; Transposable element; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004670931,0.0001951679,0.0003280737,0.0009512777,0.0002877489,0.0005549264,0.0004514288,0.000570884,0.001256038],"category_scores_gemma":[0.001261358,0.0001652963,0.0002667031,0.0006148079,0.0004399086,0.00041097,0.000337749,0.0005094604,0.0003088353],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002932758,"about_ca_system_score_gemma":0.000146053,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004579923,"about_ca_topic_score_gemma":0.0006984131,"domain_scores_codex":[0.9996848,0.00005751501,0.00003117574,0.0001121919,0.00007169897,0.00004259183],"domain_scores_gemma":[0.998645,0.000448308,0.0005037774,0.00008810875,0.0001553404,0.0001594339],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005772323,0.0001233278,0.1765567,0.0001922014,0.0002214331,0.0003774198,0.0004218813,0.0009718318,0.8106494,0.0005923502,0.00006268455,0.009253616],"study_design_scores_gemma":[0.00001501053,0.000279118,0.9573288,0.00001851786,0.00009637344,0.001184955,0.0002384745,0.004375344,0.03465466,0.001155585,0.0006200582,0.00003304753],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998159,0.0003434364,0.0009236484,0.00001278919,0.000003865833,0.000009148267,0.0001279817,0.00001231284,0.0004078547],"genre_scores_gemma":[0.999106,0.00007631622,0.000481923,0.00001420004,0.000004418346,0.000007685476,0.0001993711,0.00000709699,0.0001030007],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001256038,"threshold_uncertainty_score":0.004201889,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01750749523279579,"score_gpt":0.1943863874664715,"score_spread":0.1768788922336758,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}