{"id":"W3015944243","doi":"10.1038/s41598-020-63278-z","title":"Phylogenetic Inference of H3N2 Canine Influenza A Outbreak in Ontario, Canada in 2018","year":2020,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Guelph; Canadian Science Centre for Human and Animal Health","funders":"Canadian Food Inspection Agency","keywords":"Clade; Phylogenetic tree; Outbreak; Phylogenetics; Biology; Molecular epidemiology; Epidemiology; Cluster (spacecraft); Pandemic; Virology; China; Evolutionary biology; Transmission (telecommunications); Zoology; Geography; Coronavirus disease 2019 (COVID-19); Genetics; Medicine; Genotype; Gene; Archaeology; Infectious disease (medical specialty); Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003643312,0.0003119281,0.0002919384,0.002203592,0.003238331,0.0009249366,0.0004760684,0.0002531441,0.0008709984],"category_scores_gemma":[0.001289917,0.0002094107,0.0004323934,0.003540952,0.0004404834,0.0001955714,0.0005691854,0.0003915501,0.0001775671],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01784956,"about_ca_system_score_gemma":0.02232294,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9865146,"about_ca_topic_score_gemma":0.9932376,"domain_scores_codex":[0.9995983,0.0000250288,0.00001731769,0.00009360455,0.0001218174,0.0001440484],"domain_scores_gemma":[0.9991139,0.00005582776,0.0001069512,0.00002886335,0.000528392,0.0001661641],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003353031,0.00003670257,0.9617905,0.0001212738,0.000138045,0.000636726,0.002491697,0.00299968,0.01080689,0.0006882133,0.003580316,0.01637461],"study_design_scores_gemma":[0.00000867716,0.00002128194,0.9840125,0.00004724554,0.00005847129,0.0001534952,0.002816089,0.004833163,0.0004959232,0.00008364834,0.007453871,0.00001558814],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9878011,0.0004558011,0.0006435454,0.0002125508,0.00001344852,0.00006624689,0.005606011,0.00003288391,0.005168409],"genre_scores_gemma":[0.9900332,0.0004469409,0.001577081,0.00008002276,0.000005341823,0.00002519361,0.006818487,0.00001189533,0.001001937],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01784956,"threshold_uncertainty_score":0.1295082,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08317325600423174,"score_gpt":0.3332667570081459,"score_spread":0.2500935010039141,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}