{"id":"W3016071083","doi":"10.3390/toxins12040242","title":"Expansion and Conservation of Biosynthetic Gene Clusters in Pathogenic Pyrenophora spp.","year":2020,"lang":"en","type":"article","venue":"Toxins","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"Grains Research and Development Corporation","keywords":"Biology; Polyketide synthase; Gene; Genetics; In silico; Genome; Pyrenophora; Ribosomal RNA; Polyketide; Microbiology; Biosynthesis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008853221,0.00007652867,0.0001933261,0.00005005677,0.00001469485,0.000004057562,0.00003343301,0.00005969737,0.00009012823],"category_scores_gemma":[0.0001355162,0.00005938864,0.00002913885,0.0001802171,0.00005001545,0.00003208675,0.00003095899,0.00007796293,0.00001174751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001400036,"about_ca_system_score_gemma":0.00003082956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005259675,"about_ca_topic_score_gemma":0.00001645707,"domain_scores_codex":[0.9994307,0.0000241716,0.0001888701,0.0001793936,0.00008017255,0.00009670113],"domain_scores_gemma":[0.999726,0.00002298343,0.00005037765,0.0001041296,0.00003090795,0.00006560645],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001693263,0.00003536584,0.001216381,0.00009940686,0.000007329671,0.00001118915,0.0002599768,8.816567e-7,0.992034,0.000009655402,0.0004756345,0.005680838],"study_design_scores_gemma":[0.0008448101,0.0002455518,0.01974162,0.0001109333,0.00004764249,0.00002121603,0.0001251964,0.000630277,0.9759128,0.000013448,0.002201574,0.0001049261],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982394,0.0005896105,0.000009227992,0.01665391,0.00003455457,0.0002106916,0.00001298115,0.00001582068,0.00007922809],"genre_scores_gemma":[0.9972489,0.0002332543,0.0006778799,0.001722806,0.00005104982,3.191192e-7,0.00001003799,0.000008577609,0.00004712613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01852524,"threshold_uncertainty_score":0.2421799,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02199632123754627,"score_gpt":0.2341938231592289,"score_spread":0.2121975019216826,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}