{"id":"W3016187519","doi":"10.3389/fimmu.2020.00645","title":"The Bacterium Akkermansia muciniphila: A Sentinel for Gut Permeability and Its Relevance to HIV-Related Inflammation","year":2020,"lang":"en","type":"review","venue":"Frontiers in Immunology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":126,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre Hospitalier de l’Université de Montréal; McGill University; McGill University Health Centre","funders":"Canadian Institutes of Health Research; National Science and Technology Major Project; Pfizer","keywords":"Akkermansia muciniphila; Dysbiosis; Gut flora; Medicine; Akkermansia; Immunology; Inflammation; Diabetes mellitus; Metformin; Intestinal permeability; Biology; Lactobacillus; Bacteria; Endocrinology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003171625,0.0003213742,0.0008432008,0.00008682052,0.0001536429,0.00002545591,0.0003303403,0.0006152852,0.000002379608],"category_scores_gemma":[0.0004027588,0.0002596187,0.0001778325,0.0001656858,0.0001150248,0.00000454686,0.0002191449,0.0003441533,0.00001643922],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008418474,"about_ca_system_score_gemma":0.0002753894,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002404553,"about_ca_topic_score_gemma":0.0000118449,"domain_scores_codex":[0.9980003,0.0002537592,0.0006682884,0.0006145764,0.00004394218,0.0004191266],"domain_scores_gemma":[0.9991204,0.0000533923,0.0002656722,0.0004147479,0.00008114889,0.00006466678],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003746813,0.00004298364,0.000112622,0.006055155,0.0005860201,0.00000644852,0.000356636,0.000001768225,0.02098671,0.0002032619,0.02463051,0.9466432],"study_design_scores_gemma":[0.000399075,0.0001042206,0.0004297262,0.0003959675,0.00008348708,0.00003193975,0.00003386141,0.00002124091,0.00006502253,0.0000464243,0.9981425,0.0002464987],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.002884966,0.992759,0.0002831026,0.001282407,0.001044897,0.001606972,0.00008497995,0.00001509342,0.00003861605],"genre_scores_gemma":[0.000275093,0.9974067,0.0006018171,0.00009119835,0.0001623627,0.0002680025,0.0005994618,0.00004571126,0.0005496119],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9735121,"threshold_uncertainty_score":0.9999856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01137197518050192,"score_gpt":0.2745161317518276,"score_spread":0.2631441565713257,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}