{"id":"W3016385513","doi":"10.1002/aps3.11334","title":"Botanical microbiomes on the cheap: Inexpensive molecular fingerprinting methods to study plant‐associated communities of bacteria and fungi","year":2020,"lang":"en","type":"review","venue":"Applications in Plant Sciences","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Universidad del Valle; Max-Planck-Gesellschaft","keywords":"Biology; Ribosomal Intergenic Spacer analysis; Terminal restriction fragment length polymorphism; Microbiome; Microbial ecology; Amplicon; Restriction fragment length polymorphism; Temperature gradient gel electrophoresis; Intergenic region; Ribosomal RNA; Genetics; Ribosomal DNA; DNA profiling; Computational biology; Microbial population biology; DNA sequencing; 16S ribosomal RNA; Internal transcribed spacer; Polymerase chain reaction; Bacteria; DNA; Gene; Genome; Phylogenetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005971647,0.0002151969,0.0005258192,0.00009112438,0.0001765946,0.00004648248,0.0005826831,0.0001038943,0.000003166386],"category_scores_gemma":[0.0001586683,0.0001427972,0.00008807272,0.0004009712,0.0001738051,0.000002492749,0.0003328133,0.0001377996,0.000001977195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001038226,"about_ca_system_score_gemma":0.00008958325,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002871716,"about_ca_topic_score_gemma":0.00004214158,"domain_scores_codex":[0.9985791,0.0004238557,0.0003670359,0.0003474372,0.0001101706,0.0001723525],"domain_scores_gemma":[0.9989,0.0005091637,0.0002127244,0.0002936208,0.00002854948,0.00005595619],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00009827378,0.001950332,0.00503546,0.001930293,0.001251648,0.00004415273,0.002238031,0.00002335221,0.5843023,0.005305714,0.0008887026,0.3969317],"study_design_scores_gemma":[0.000407055,0.001370709,0.0051218,0.004170605,0.0008176845,0.0001000929,0.007377533,0.00008005558,0.01204605,0.0001142142,0.9669222,0.001471999],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.1366598,0.8545287,0.0002481338,0.00008208543,0.00005386689,0.002386758,0.005848176,0.00001616776,0.0001763396],"genre_scores_gemma":[0.07723017,0.918115,0.002801178,0.0002414504,0.00003883453,0.0003604418,0.001182652,0.00002354195,0.000006755548],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9660335,"threshold_uncertainty_score":0.5823101,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06409955767713764,"score_gpt":0.3599164974318079,"score_spread":0.2958169397546702,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}