{"id":"W3016623328","doi":"10.3390/microorganisms8040576","title":"Salmonella Pathogenicity Island 1 (SPI-1): The Evolution and Stabilization of a Core Genomic Type Three Secretion System","year":2020,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":68,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Regina","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Pathogenicity island; Biology; Effector; Genetics; Gene; Type three secretion system; Horizontal gene transfer; Genome; Genomic island; Promoter; Cell biology; Virulence; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001712969,0.0002729495,0.0001851572,0.0004396966,0.0002604316,0.0002975664,0.0001927688,0.0003352156,0.0005249305],"category_scores_gemma":[0.0002740598,0.0001019588,0.0002290245,0.0005104269,0.0002443225,0.0003024401,0.0005232891,0.0003875439,0.0002691402],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003085015,"about_ca_system_score_gemma":0.0003240016,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001481521,"about_ca_topic_score_gemma":0.001119264,"domain_scores_codex":[0.9998947,0.00001110347,0.000005014509,0.00003775011,0.00002430812,0.00002710978],"domain_scores_gemma":[0.9998549,0.00001224991,0.00006130354,0.00001331225,0.00003017341,0.00002804174],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003491456,0.00006625073,0.06685103,0.0002487633,0.00003706546,0.0004045079,0.0003527818,0.0009942203,0.8848166,0.0008973479,0.0003385979,0.04464361],"study_design_scores_gemma":[0.00003605722,0.0009052211,0.7449176,0.0001181943,0.0001253215,0.00449669,0.0007468348,0.00881786,0.2154712,0.002005283,0.02230163,0.00005818511],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9909859,0.001131196,0.005956692,0.0001090479,0.00001444421,0.00002285429,0.0004059828,0.0001116388,0.001262368],"genre_scores_gemma":[0.9913478,0.0007762281,0.005994969,0.00006561375,0.000009955005,0.00001535106,0.001032606,0.00002656081,0.0007309405],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001481521,"threshold_uncertainty_score":0.00294584,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02838522513216308,"score_gpt":0.2029449980421272,"score_spread":0.1745597729099641,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}