{"id":"W3016661740","doi":"10.1128/aem.00227-20","title":"Novel Genus of Phages Infecting Streptococcus thermophilus: Genomic and Morphological Characterization","year":2020,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":34,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs; Government of Canada","keywords":"Streptococcus thermophilus; Biology; Virulence; Microbiology; Bacteriophage; Population; Bacteria; Genetics; Gene; Escherichia coli; Lactobacillus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00003401206,0.0001372304,0.0001737875,0.00001172292,0.00007998761,0.00000967783,0.00006878874,0.00009107349,0.0009719497],"category_scores_gemma":[0.000002391977,0.0001223799,0.00002611083,0.00003205956,0.0003329181,0.00005445149,0.0002904533,0.0001057003,0.00006099318],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002585173,"about_ca_system_score_gemma":0.00000133531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002475566,"about_ca_topic_score_gemma":0.000001894809,"domain_scores_codex":[0.9993109,0.00001519964,0.0001850082,0.0003127173,0.0000181318,0.0001580893],"domain_scores_gemma":[0.9997368,0.00002065441,0.0001025786,0.00007248343,4.947158e-7,0.00006700053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001870047,0.00005343604,0.006908237,0.000005635024,0.0000134788,0.000001600868,0.0003269392,0.000009371547,0.9849992,0.000008607985,0.00001232395,0.007642506],"study_design_scores_gemma":[0.0007146504,0.0001889717,0.7435952,0.000004378172,0.00003201833,0.0001629074,0.0002474204,0.0000597053,0.2475664,0.000009942607,0.007167128,0.0002513447],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988072,0.00003948739,0.0003665489,0.0001288811,0.00002974498,0.000209495,0.0001486466,0.00001551571,0.0002544661],"genre_scores_gemma":[0.9987277,0.0001262085,0.0003098349,0.0006106477,0.00003156471,0.00001057343,0.0001504202,0.00001158719,0.00002148359],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7374328,"threshold_uncertainty_score":0.9999413,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008757525471796318,"score_gpt":0.1817874334692768,"score_spread":0.1730299079974805,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}