{"id":"W3017001125","doi":"10.1128/msphere.00056-20","title":"Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Serotype; Salmonella enterica; Outbreak; Salmonella; Virology; Microbiology; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002600662,0.0001812888,0.0004380947,0.00002762249,0.00007306326,0.000009597529,0.0002820673,0.0001128246,0.0001832699],"category_scores_gemma":[0.0002699381,0.00009756953,0.000053647,0.001730544,0.00004378032,0.00008747578,0.0001372319,0.0002403224,0.00001372789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002568725,"about_ca_system_score_gemma":0.000008367629,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004557204,"about_ca_topic_score_gemma":0.01284067,"domain_scores_codex":[0.9980273,0.0002112087,0.000684989,0.0005427696,0.0001517801,0.000381996],"domain_scores_gemma":[0.9994789,0.0000945016,0.0001839508,0.00007187845,0.00006552693,0.0001052113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001980646,0.0001855735,0.5549958,0.00002108585,0.000003758144,0.000008800754,0.002888483,0.0004704632,0.4320064,0.000005136672,0.0002894721,0.008926986],"study_design_scores_gemma":[0.0002980958,0.0002835658,0.9940154,0.0001111882,0.000003397247,0.000001322985,0.002098646,0.0009595585,0.00133612,0.000008599844,0.0006645388,0.0002195507],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966746,0.00005154492,0.000006572269,0.00265699,0.0001248346,0.000352858,0.00002461375,0.00002744817,0.00008056314],"genre_scores_gemma":[0.9988263,0.00003779648,0.0001252523,0.0007406276,0.0001504994,0.00002987844,0.00007188933,0.00000273265,0.00001507902],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4390196,"threshold_uncertainty_score":0.7165394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07408533433080187,"score_gpt":0.2881407727046906,"score_spread":0.2140554383738887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}