{"id":"W3017001125","doi":"10.1128/msphere.00056-20","title":"Emergence of a Novel Salmonella enterica Serotype Reading Clonal Group Is Linked to Its Expansion in Commercial Turkey Production, Resulting in Unanticipated Human Illness in North America","year":2020,"lang":"en","type":"article","venue":"mSphere","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada","funders":"","keywords":"Serotype; Salmonella enterica; Outbreak; Salmonella; Virology; Microbiology; Biology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002559342,0.0001930776,0.0001070125,0.0007256303,0.0002967612,0.0003892352,0.0001581773,0.0002580642,0.0009772843],"category_scores_gemma":[0.0003210387,0.0001171235,0.0001392887,0.0005087701,0.0002719567,0.0001776423,0.0002171523,0.0003058302,0.00009847261],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000445127,"about_ca_system_score_gemma":0.0003581209,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007574352,"about_ca_topic_score_gemma":0.01201136,"domain_scores_codex":[0.9998307,0.00001714794,0.00001003038,0.00005912895,0.00004295168,0.00004005331],"domain_scores_gemma":[0.9995602,0.00005452673,0.0002033911,0.00002933115,0.00007116979,0.00008137649],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0005012914,0.0001485332,0.833084,0.00007127443,0.00004888236,0.001550188,0.0006494982,0.0002319263,0.1385497,0.0001980844,0.0005560676,0.02441062],"study_design_scores_gemma":[0.0000034918,0.0002156474,0.9933522,0.000008659754,0.00001472283,0.0008219442,0.0004938365,0.0002402774,0.003937312,0.00003527834,0.0008722831,0.000004418678],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9990018,0.00009799669,0.0002308304,0.00003311221,0.000004230771,0.00000923651,0.0001076183,0.000008932027,0.0005062928],"genre_scores_gemma":[0.9988538,0.00008696956,0.0004518387,0.00002544723,0.000004785566,0.000003223026,0.000259461,0.000001619091,0.0003127951],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007574352,"threshold_uncertainty_score":0.01506054,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07408533433080187,"score_gpt":0.2881407727046906,"score_spread":0.2140554383738887,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}