{"id":"W3017125837","doi":"10.7717/peerj.9023","title":"Deep conservation of prion-like composition in the eukaryotic prion-former Pub1/Tia1 family and its relatives","year":2020,"lang":"en","type":"article","venue":"PeerJ","topic":"RNA Research and Splicing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; Compute Canada","keywords":"Stress granule; Biology; Genetics; Protein family; Saccharomyces cerevisiae; RNA; Conserved sequence; RNA-binding protein; Gene; Messenger RNA; Translation (biology); Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001765016,0.0002139475,0.0002396439,0.0007942106,0.0003655757,0.0003967247,0.000145194,0.0003245216,0.001188705],"category_scores_gemma":[0.0004006743,0.0001148959,0.0002405151,0.000511726,0.0003305423,0.000413168,0.000349614,0.0003391728,0.0005869063],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001328123,"about_ca_system_score_gemma":0.0001332318,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003416821,"about_ca_topic_score_gemma":0.0004656938,"domain_scores_codex":[0.9998893,0.00001078915,0.000008326383,0.00004591003,0.00003077883,0.00001494708],"domain_scores_gemma":[0.9996152,0.00005740262,0.0001633216,0.00004995023,0.00004001258,0.00007401254],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002045767,0.00002261797,0.02476401,0.0001518978,0.00003450319,0.0006328209,0.0003212717,0.0001196177,0.9659539,0.0002487589,0.00009047024,0.007455479],"study_design_scores_gemma":[0.00001872017,0.000291397,0.9116914,0.00004502438,0.0001317391,0.01032073,0.0003975471,0.001598854,0.06530276,0.0006576389,0.009510761,0.00003337639],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957978,0.001686294,0.001112294,0.00003723189,0.00000581474,0.000005269648,0.0002915807,0.00004217699,0.001021551],"genre_scores_gemma":[0.997129,0.0003579714,0.0009325662,0.00003113729,0.00000920232,0.000005758983,0.0008136256,0.00001198189,0.0007087861],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001188705,"threshold_uncertainty_score":0.003976583,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02559219553417682,"score_gpt":0.2707064545918401,"score_spread":0.2451142590576632,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}