{"id":"W301731979","doi":"10.1097/inf.0000000000000697","title":"Genetic Analysis of Invasive Pneumococcal Isolates from Children in Ontario, Canada, 2007–2012","year":2015,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Multilocus sequence typing; Serotype; Pneumococcal conjugate vaccine; Biology; Genotype; Genetic diversity; Population; Streptococcus pneumoniae; Genetics; Typing; Virology; Medicine; Gene; Antibiotics; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003659986,0.0005399702,0.0003712207,0.001712077,0.001907652,0.0007688188,0.0007337767,0.0003368284,0.0009818251],"category_scores_gemma":[0.001107254,0.0002593906,0.000468063,0.003918622,0.0006752399,0.0001683279,0.000514961,0.0004216987,0.0002183782],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02199454,"about_ca_system_score_gemma":0.02200958,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9818824,"about_ca_topic_score_gemma":0.9883209,"domain_scores_codex":[0.9990507,0.00002135882,0.00004888851,0.000124494,0.0004973401,0.0002573038],"domain_scores_gemma":[0.9985151,0.00003851953,0.0002419239,0.00002264494,0.0009355134,0.0002463954],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001657634,0.00003197381,0.9850798,0.0001301991,0.00003777203,0.0005984293,0.001812575,0.000169114,0.004102333,0.00006872348,0.0015027,0.006300735],"study_design_scores_gemma":[0.000004107615,0.00004159609,0.9967524,0.00001867388,0.00001493581,0.0001893127,0.0007017232,0.00008106436,0.0004112882,0.000003942235,0.00177618,0.000004784195],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9866782,0.0007543129,0.0002152293,0.0001752086,0.00001605873,0.0001234248,0.009417647,0.00002031036,0.002599515],"genre_scores_gemma":[0.9887332,0.0009483101,0.0008503678,0.0001596837,0.00001257664,0.00005640856,0.007302324,0.00001069644,0.001926422],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02199454,"threshold_uncertainty_score":0.1595823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0099951590063174,"score_gpt":0.2227457330043543,"score_spread":0.2127505739980369,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}