{"id":"W301731979","doi":"10.1097/inf.0000000000000697","title":"Genetic Analysis of Invasive Pneumococcal Isolates from Children in Ontario, Canada, 2007–2012","year":2015,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Mount Sinai Hospital; University of Toronto; Public Health Ontario; Toronto Public Health","funders":"","keywords":"Multilocus sequence typing; Serotype; Pneumococcal conjugate vaccine; Biology; Genotype; Genetic diversity; Population; Streptococcus pneumoniae; Genetics; Typing; Virology; Medicine; Gene; Antibiotics; Environmental health","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002359488,0.0001923133,0.0004438339,0.0005893615,0.0001555422,0.00002830237,0.0001436856,0.0000731433,0.0006686034],"category_scores_gemma":[0.0002850898,0.0001326059,0.0002686606,0.0009800768,0.00005432684,0.0000967053,0.00004715085,0.0006535703,0.00001306133],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007531838,"about_ca_system_score_gemma":0.0064512,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7879512,"about_ca_topic_score_gemma":0.9497808,"domain_scores_codex":[0.9983802,0.0001740669,0.0005410027,0.0001833025,0.0004018182,0.0003196279],"domain_scores_gemma":[0.9982623,0.0001894975,0.0003028285,0.0003037758,0.0002446469,0.0006969432],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006856873,0.0002470721,0.9907429,0.000004860273,0.0007928573,0.0001035719,0.0002579284,0.005616636,0.00007962438,0.00000145653,0.002042431,0.00004214522],"study_design_scores_gemma":[0.001127906,0.0001227957,0.9917983,0.000009422276,0.006007813,0.0001969104,0.00005163163,0.0001438725,0.000003673778,0.0002083034,0.000188915,0.0001404274],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975317,0.0008016264,0.00003829829,0.0003621527,0.0005175687,0.0002433,0.00005519039,0.00001617634,0.0004339852],"genre_scores_gemma":[0.9983791,0.0001809051,0.000007276773,0.0004520976,0.0008227825,0.00001083992,0.00001546126,0.00001638488,0.0001151238],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1618295,"threshold_uncertainty_score":0.9991813,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0099951590063174,"score_gpt":0.2227457330043543,"score_spread":0.2127505739980369,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}