{"id":"W3017647226","doi":"10.1093/ecco-jcc/jjaa084","title":"A Diversified Dietary Pattern Is Associated With a Balanced Gut Microbial Composition of Faecalibacterium and Escherichia/Shigella in Patients With Crohn’s Disease in Remission","year":2020,"lang":"en","type":"article","venue":"Journal of Crohn s and Colitis","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"Women and Children’s Health Research Institute; University of Calgary; University of Alberta","funders":"Crohn's and Colitis Foundation","keywords":"Medicine; Internal medicine; Feces; Gastroenterology; Shigella; Gut flora; Crohn's disease; Calprotectin; Faecalibacterium prausnitzii; Faecal calprotectin; Escherichia coli; Animal science; Disease; Inflammatory bowel disease; Microbiology; Biology; Immunology; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005906949,0.0001016371,0.0002321648,0.00003544839,0.00002875882,0.00001656885,0.00005035298,0.00006724303,0.000007016556],"category_scores_gemma":[0.000009908968,0.00007980869,0.00002765478,0.00007001888,0.00005258249,0.00001100572,0.00003890537,0.0001106329,7.073465e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001817294,"about_ca_system_score_gemma":0.0000788333,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000535886,"about_ca_topic_score_gemma":0.00004765979,"domain_scores_codex":[0.9993231,0.00005855599,0.0002491621,0.0001440625,0.00008821069,0.0001368943],"domain_scores_gemma":[0.9994667,0.000006491156,0.0002257948,0.00005179319,0.00009883182,0.0001503639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01409012,0.0002661944,0.8805351,0.0001367206,0.00005602935,0.0001238896,0.0006709768,0.000007300385,0.1029412,4.992768e-7,0.0002963284,0.0008757476],"study_design_scores_gemma":[0.003555148,0.0008510206,0.9933757,0.0002891011,0.00002457786,0.000004060087,0.00004664983,0.00001957406,0.001618564,0.000002310319,0.0001146277,0.00009868764],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999078,0.0001433585,0.0000249718,0.000492508,0.00001746981,0.0001338178,0.00009977947,0.000001046978,0.000009069497],"genre_scores_gemma":[0.9990041,0.0001312012,0.00006676899,0.0007036297,0.00002450673,7.702944e-7,0.0000530321,0.000008400762,0.000007610271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1128406,"threshold_uncertainty_score":0.3254504,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007145131518697691,"score_gpt":0.2091688789462779,"score_spread":0.2020237474275802,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}