{"id":"W3017811271","doi":"10.1101/2020.04.23.055285","title":"Symbiotic and non-symbiotic members of the genus <i>Ensifer</i> (syn. <i>Sinorhizobium</i> ) are separated into two clades based on comparative genomics and high-throughput phenotyping","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Fondazione Cassa di Risparmio di Firenze; Ministero dell’Istruzione, dell’Università e della Ricerca; Teagasc","keywords":"Biology; Clade; Symbiosis; Rhizobia; Nitrogen fixation; Sinorhizobium; Phylogenetic tree; Botany; Evolutionary biology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002253768,0.0002757159,0.0002814979,0.000833985,0.0003786451,0.0003798775,0.0001927247,0.0001661237,0.0006933269],"category_scores_gemma":[0.0003089357,0.0001284129,0.0002709546,0.0006958658,0.0002206528,0.0002831503,0.0005937616,0.0002199182,0.0001659066],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001763102,"about_ca_system_score_gemma":0.0002011882,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002144873,"about_ca_topic_score_gemma":0.004089196,"domain_scores_codex":[0.9996977,0.00003503336,0.00003780279,0.00008392301,0.00007178472,0.00007383196],"domain_scores_gemma":[0.9996495,0.00006109394,0.0001273396,0.00004016447,0.0000548256,0.00006704367],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003577679,0.00004393977,0.0814449,0.0001274399,0.00004698963,0.0001035192,0.0002360475,0.00008904011,0.911182,0.0001092611,0.00006321494,0.006195691],"study_design_scores_gemma":[0.00001104602,0.0002860835,0.9431623,0.00002285556,0.00009064887,0.0007153376,0.000723813,0.0006515494,0.05166493,0.0001293181,0.002529018,0.00001308691],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980558,0.000383181,0.0004617014,0.00001422912,0.000003200452,0.00001136995,0.000462279,0.00001522479,0.0005929819],"genre_scores_gemma":[0.9966023,0.0002055392,0.001070353,0.00002353124,0.000003805127,0.00001493103,0.00176357,0.000007077593,0.0003088403],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002144873,"threshold_uncertainty_score":0.004264772,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01680661716609068,"score_gpt":0.210871845358565,"score_spread":0.1940652281924743,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}