{"id":"W3019651879","doi":"10.1007/s10658-020-01978-y","title":"Blackcurrant waikavirus A, a new member of the genus Waikavirus, and its phylogenetic and molecular relationship with other known members","year":2020,"lang":"en","type":"article","venue":"European Journal of Plant Pathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":13,"is_retracted":false,"has_abstract":false,"ca_institutions":"Linnaeus Plant Sciences (Canada)","funders":"Agricultural Research Service","keywords":"Biology; ORFS; Phylogenetic tree; Genetics; Open reading frame; In silico; Genome; Capsid; RNA polymerase; Helicase; Novel virus; Gene; RNA; Peptide sequence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004276381,0.000129049,0.0002369294,0.00001649631,0.00009878937,0.0000188796,0.0002324188,0.000028821,0.00004579344],"category_scores_gemma":[0.0002032678,0.00004215614,0.00004955551,0.00015337,0.0001592862,0.00004643655,0.0001356891,0.0002553847,0.000007079969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004809845,"about_ca_system_score_gemma":0.00001636521,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009682657,"about_ca_topic_score_gemma":0.00005191031,"domain_scores_codex":[0.9985077,0.0006376259,0.0002828124,0.0001657707,0.0002184795,0.000187641],"domain_scores_gemma":[0.9992689,0.000211762,0.0002560613,0.00003958572,0.00005961569,0.0001640131],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003304905,0.00002865154,0.01524924,0.00002025945,0.00007426033,0.0009140718,0.001042953,0.00004585627,0.9773331,0.0001469979,0.001184433,0.003629676],"study_design_scores_gemma":[0.002145486,0.003708769,0.8504162,0.0002759818,0.0002628,0.005040279,0.0005953661,0.0001475303,0.04235048,0.0001405779,0.09437489,0.0005416071],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937528,0.003089009,0.000008623653,0.002330427,0.00003180154,0.000116685,0.0002091141,0.000005524269,0.0004559765],"genre_scores_gemma":[0.9987779,0.000464187,0.0001345523,0.000456963,0.0001078898,4.347404e-7,0.00000243145,0.000002645852,0.00005298146],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9349826,"threshold_uncertainty_score":0.1719078,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0566851499067916,"score_gpt":0.2364900848657235,"score_spread":0.1798049349589319,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}