{"id":"W3020060419","doi":"10.3389/fcimb.2020.00173","title":"Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Calgary Laboratory Services","keywords":"Pseudomonas aeruginosa; Microbiology; Cystic fibrosis; Biology; Medicine; Immunology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002140767,0.0001827084,0.0002862301,0.0004015658,0.0005353318,0.0004301044,0.000101503,0.0002851741,0.001069025],"category_scores_gemma":[0.0007966844,0.0001515928,0.0001704289,0.0003864491,0.0003624893,0.0003557513,0.0003944936,0.0003977957,0.0001547276],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001383548,"about_ca_system_score_gemma":0.0001615138,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001351893,"about_ca_topic_score_gemma":0.001605188,"domain_scores_codex":[0.9998069,0.00002721451,0.00002201312,0.00005373406,0.00004501482,0.00004500932],"domain_scores_gemma":[0.9995537,0.00009165354,0.0002024518,0.00002661192,0.00004909642,0.00007641948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00008191967,0.00004421962,0.9912217,0.00001580269,0.00001178011,0.0006500576,0.0002181841,0.00002758377,0.004750917,0.00002127847,0.00003303682,0.002923609],"study_design_scores_gemma":[0.000002988831,0.0001690871,0.9955568,0.000007639019,0.00001015246,0.003140846,0.000471209,0.00008886938,0.0003920005,0.00003115853,0.0001263237,0.000003045261],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9997242,0.00009356904,0.00003690902,0.00001217176,7.914873e-7,0.000003380317,0.00001772381,0.000001331525,0.000109904],"genre_scores_gemma":[0.9997186,0.00006880072,0.00008773718,0.00001509565,0.000002755351,0.00000215307,0.000038132,5.03171e-7,0.00006620603],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001351893,"threshold_uncertainty_score":0.003576279,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01161759651961471,"score_gpt":0.2392484090040517,"score_spread":0.227630812484437,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}