{"id":"W3020060419","doi":"10.3389/fcimb.2020.00173","title":"Cystic Fibrosis Patients Infected With Epidemic Pseudomonas aeruginosa Strains Have Unique Microbial Communities","year":2020,"lang":"en","type":"article","venue":"Frontiers in Cellular and Infection Microbiology","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; University of Calgary","funders":"Canadian Institutes of Health Research; Cystic Fibrosis Canada; Calgary Laboratory Services","keywords":"Pseudomonas aeruginosa; Microbiology; Cystic fibrosis; Biology; Medicine; Immunology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001743117,0.0002758191,0.0005793266,0.0002845091,0.0001357951,0.00002673289,0.00009238662,0.0002263126,0.00006964877],"category_scores_gemma":[0.0002009299,0.0002398278,0.00007534294,0.0003085273,0.0005748284,0.0001368421,0.00009923909,0.0006287371,0.000009781071],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001534594,"about_ca_system_score_gemma":0.0001154152,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004859753,"about_ca_topic_score_gemma":0.0001866236,"domain_scores_codex":[0.998352,0.0003841403,0.0003911308,0.0003471717,0.00007499259,0.0004505968],"domain_scores_gemma":[0.9992062,0.0001193246,0.0001215663,0.0002072074,0.0001486977,0.0001969981],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000779003,0.0001767365,0.6569398,0.0002466666,0.00009606186,0.00001723842,0.00075589,0.00007555416,0.3355906,0.00001312671,0.003900248,0.001409052],"study_design_scores_gemma":[0.04400945,0.02080601,0.5030912,0.001752122,0.0006865318,0.0008359466,0.003709445,0.007307137,0.2784148,0.0004830451,0.1360372,0.002867081],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9693797,0.0004928613,0.02842448,0.0003758273,0.0002381551,0.0007180915,0.0001167099,0.00008226873,0.0001719006],"genre_scores_gemma":[0.9875656,0.0003263328,0.01042969,0.0005371585,0.00007754699,0.00002968513,0.0009519505,0.0000328975,0.00004915395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1538486,"threshold_uncertainty_score":0.9779892,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01161759651961471,"score_gpt":0.2392484090040517,"score_spread":0.227630812484437,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}