{"id":"W3021325701","doi":"10.1093/sysbio/syaa034","title":"Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life","year":2020,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Amphibian and Reptile Biology","field":"Environmental Science","cited_by":224,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Museum of Comparative Zoology, Harvard University; Australian Research Council; Yale University; Secretaría de Educación Superior, Ciencia, Tecnología e Innovación; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; National Centre for Biological Sciences; Society of Systematic Biologists; Florida Museum of Natural History; Universidade de Brasília; National Science Foundation; Systematics Association; University of Kentucky; Harvard University; Louisiana State University","keywords":"Biology; Phylogenomics; Amphibian; Phylogenetic tree; Monophyly; Phylogenetics; Evolutionary biology; Supertree; Lineage (genetic); Ecology; Clade; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004202494,0.0001121366,0.0002982523,0.001202948,0.0003458086,0.0006841838,0.0002867417,0.0002489288,0.0007199641],"category_scores_gemma":[0.001389607,0.0001901167,0.0001764912,0.0007407922,0.0005778339,0.0004055226,0.0005623359,0.0004851435,0.0001951545],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002278531,"about_ca_system_score_gemma":0.0001064702,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005001918,"about_ca_topic_score_gemma":0.00109844,"domain_scores_codex":[0.9996792,0.00006235735,0.00001896973,0.0001181559,0.00007474366,0.00004665426],"domain_scores_gemma":[0.9988313,0.0004345275,0.000416568,0.000140095,0.00009084285,0.00008654853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000473443,0.00003671511,0.3830615,0.00007579687,0.0001435638,0.0002092803,0.001639451,0.002716613,0.5858867,0.001490151,0.0001359333,0.02413082],"study_design_scores_gemma":[0.00000658586,0.00006999071,0.980005,0.000008581908,0.00004425619,0.0003537822,0.0003888783,0.008259153,0.008997366,0.001141414,0.0007075428,0.00001750596],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988976,0.0000620146,0.0007420281,0.00001483622,4.548236e-7,7.670141e-7,0.00006190712,0.00001482937,0.0002056271],"genre_scores_gemma":[0.9988798,0.0000378012,0.0007565664,0.00001954528,0.000002500427,0.000002217401,0.0002057676,0.00001168385,0.0000840663],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001202948,"threshold_uncertainty_score":0.002408504,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02488405072616205,"score_gpt":0.2288353986656923,"score_spread":0.2039513479395302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}