{"id":"W3021440921","doi":"10.1186/s12866-020-01737-3","title":"Complete genome sequencing and comparative genomic analyses of Bacillus sp. S3, a novel hyper Sb(III)-oxidizing bacterium","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Arsenic contamination and mitigation","field":"Environmental Science","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ministry of Education and Child Care","funders":"Fundamental Research Funds for the Central Universities; Central South University; Chinese Academy of Sciences; Natural Science Foundation of Hainan Province; Institute of Microbiology, Chinese Academy of Sciences; National Natural Science Foundation of China; Youth Talent Foundation of Hunan Province of China","keywords":"Biology; Oxidizing agent; Bacteria; Bioremediation; Bacillus (shape); Antimony; Microbiology; Genome; genomic DNA; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009124185,0.0001208965,0.000262084,0.00002803669,0.00007022334,0.00000776769,0.0001141641,0.00005629639,0.0006512447],"category_scores_gemma":[0.00001576419,0.000113456,0.00004693356,0.0001022247,0.0002594517,0.00007190536,0.0001809104,0.00007187653,0.0001015041],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001172789,"about_ca_system_score_gemma":0.00002786645,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002268034,"about_ca_topic_score_gemma":0.0002452434,"domain_scores_codex":[0.9991803,0.00006798816,0.0002650303,0.0002892206,0.00003297022,0.0001645482],"domain_scores_gemma":[0.9996127,0.00006162088,0.0001481995,0.00009761359,0.00001303143,0.00006678731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000195873,0.000008696054,0.002037296,0.000009545622,0.00001528781,5.604933e-7,0.001951086,0.0002344431,0.9955378,0.00005689355,0.00004349007,0.00008537905],"study_design_scores_gemma":[0.005303397,0.0006246828,0.3633709,0.00004315027,0.0002228977,0.000326162,0.007726861,0.01249192,0.4915968,0.00004362089,0.1169588,0.001290903],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922016,0.0001005192,0.006346657,0.000152917,0.00003474567,0.0001667022,0.00007863255,0.00001753494,0.0009006996],"genre_scores_gemma":[0.9924405,0.00001012314,0.006759773,0.0005999155,0.00002175751,0.000003471333,0.00007407655,0.000005608415,0.00008477736],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5039409,"threshold_uncertainty_score":0.7130673,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1333047179158798,"score_gpt":0.2797050675520009,"score_spread":0.1464003496361211,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}