{"id":"W3021539765","doi":"10.1128/mra.00300-20","title":"Draft Genome Sequences of 27 Staphylococcus aureus Strains and 3 <i>Staphylococcus</i> Species Strains Isolated from Bovine Intramammary Infections","year":2020,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe; Fonds de Recherche du Québec – Nature et Technologies; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Staphylococcus aureus; Mastitis; Microbiology; Staphylococcus; Biology; Genome; Staphylococcal infections; Micrococcaceae; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0002003045,0.0003113438,0.0004603164,0.00002841364,0.0002804902,0.00005609114,0.0004379883,0.0002530673,0.001042461],"category_scores_gemma":[0.00006077902,0.0001657867,0.0001162207,0.0003542844,0.000609451,0.0001242854,0.000279304,0.0003077689,0.00003294539],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000297756,"about_ca_system_score_gemma":0.00002841379,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000296494,"about_ca_topic_score_gemma":0.0006611941,"domain_scores_codex":[0.9980071,0.0002429842,0.0005573668,0.0006091784,0.0001189335,0.0004644803],"domain_scores_gemma":[0.9992273,0.000111396,0.0002585934,0.0001208736,0.00009600901,0.0001858168],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007452003,0.0001367907,0.007733645,0.0000222274,0.0001076096,0.00001181965,0.001001026,0.00004951869,0.9868057,0.00005961548,0.003217857,0.0007797131],"study_design_scores_gemma":[0.0008677652,0.002661913,0.02133077,0.00006678137,0.00007880526,0.00000845145,0.003019476,0.0000299136,0.006501076,0.0001909925,0.96458,0.0006640557],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9803163,0.0009387455,0.00005362201,0.002374408,0.00009170704,0.0003689242,0.01506642,0.00009262499,0.0006972536],"genre_scores_gemma":[0.9904845,0.0003196287,0.0000992134,0.002153241,0.0003845948,0.00001319237,0.006276585,0.000003546289,0.0002655457],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9803046,"threshold_uncertainty_score":0.9998707,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02281255300480404,"score_gpt":0.2162001321142238,"score_spread":0.1933875791094197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}