{"id":"W3021683580","doi":"10.1186/s12866-020-01804-9","title":"Bifidobacterium mongoliense genome seems particularly adapted to milk oligosaccharide digestion leading to production of antivirulent metabolites","year":2020,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Infant Nutrition and Health","field":"Nursing","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Biology; Oligosaccharide; Bifidobacterium; Bacteriocin; Escherichia coli; Salmonella enterica; Genome; Microbiology; Digestion (alchemy); Virulence; Food science; Beta-galactosidase; Fermentation; Gene; Biochemistry; Lactobacillus; Chemistry; Antimicrobial","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002494194,0.0001936628,0.0004439404,0.0002067434,0.0001037182,0.00002438417,0.0001420835,0.0001256946,0.00004004889],"category_scores_gemma":[0.00027228,0.0001925064,0.00009182909,0.0004617303,0.00004915936,0.000101844,0.00006161731,0.0001414195,0.0003371205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006893023,"about_ca_system_score_gemma":0.00004187371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007332965,"about_ca_topic_score_gemma":0.00003606613,"domain_scores_codex":[0.9982446,0.0002266405,0.0005034884,0.0005066831,0.00006071745,0.0004579106],"domain_scores_gemma":[0.9991644,0.00004215112,0.0001522289,0.0002404375,0.0001835982,0.0002171615],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007060249,0.00007703881,0.002072167,0.0001324578,0.00001611523,0.000001375923,0.002457551,0.0002092089,0.9923331,0.0001366666,0.001667004,0.0001913134],"study_design_scores_gemma":[0.0004681312,0.000560215,0.0146531,0.00006384169,0.00004952156,0.00003990387,0.0002042364,0.00005247721,0.89638,0.00001600912,0.08723441,0.0002781693],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986284,0.0002336054,0.001272324,0.01013416,0.0009605326,0.0008425322,0.0001239117,0.0001169997,0.00003188929],"genre_scores_gemma":[0.9917049,0.00001914047,0.004198377,0.003436956,0.0003839971,0.00003700891,0.0001426657,0.00002655506,0.00005042771],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09595308,"threshold_uncertainty_score":0.7850183,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03699506690599314,"score_gpt":0.2741273206100676,"score_spread":0.2371322537040745,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}