{"id":"W3023014256","doi":"10.3390/cancers12051208","title":"Methylation-Based Signatures for Gastroesophageal Tumor Classification","year":2020,"lang":"en","type":"article","venue":"Cancers","topic":"Cancer-related gene regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Alberta Innovates","keywords":"Methylation; DNA methylation; Cancer; Carcinogenesis; Cancer research; Biology; Computational biology; Gene; Oncology; Medicine; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001063925,0.0003748133,0.0005861757,0.001430528,0.0001872764,0.0005644958,0.0003704677,0.0003390294,0.0007467851],"category_scores_gemma":[0.002204568,0.0001455426,0.0004387654,0.0007664531,0.000159749,0.0002507671,0.0006630743,0.0004263853,0.0004201366],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003273052,"about_ca_system_score_gemma":0.0004109281,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002273352,"about_ca_topic_score_gemma":0.003434626,"domain_scores_codex":[0.9995832,0.0001131208,0.0000397574,0.000130832,0.00009218395,0.00004084074],"domain_scores_gemma":[0.9993976,0.0002355287,0.0001295172,0.00007586407,0.0001170875,0.00004434503],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"observational","study_design_scores_codex":[0.001411959,0.0001735627,0.4225872,0.0004110764,0.0006636537,0.0002603272,0.000236968,0.04615508,0.09206547,0.001249176,0.004756685,0.4300288],"study_design_scores_gemma":[0.00006714959,0.0004052534,0.2971081,0.00008221261,0.0003771026,0.000666521,0.0001960806,0.6432225,0.04223827,0.006264019,0.009298442,0.00007425081],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9023697,0.005293563,0.08227123,0.0004828938,0.00005728993,0.0001635649,0.005375089,0.00148432,0.002502256],"genre_scores_gemma":[0.9632297,0.0006018382,0.03090669,0.00008184916,0.0000401654,0.00006383867,0.004252104,0.00004064661,0.0007832012],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002273352,"threshold_uncertainty_score":0.005626678,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01831653308268282,"score_gpt":0.2660012366007099,"score_spread":0.2476847035180271,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}