{"id":"W3023194244","doi":"10.1111/ajt.15980","title":"Intragraft gene expression in native kidney BK virus nephropathy versus T cell–mediated rejection: Prospects for molecular diagnosis and risk prediction","year":2020,"lang":"en","type":"article","venue":"American Journal of Transplantation","topic":"Polyomavirus and related diseases","field":"Medicine","cited_by":38,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University; University of Alberta","funders":"","keywords":"Medicine; Polyomavirus Infections; BK virus; Cohort; Immunosuppression; Nephropathy; Immunology; Biopsy; Gene expression; Gene; Internal medicine; Kidney; Kidney transplantation; Biology; Endocrinology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001037181,0.0001208617,0.0002595076,0.0001437418,0.00005566254,0.00001221479,0.0000367139,0.00005301066,0.000008500341],"category_scores_gemma":[0.00015751,0.00009949418,0.00008659031,0.0002931066,0.00008303263,0.0001464081,0.000003171072,0.0002266284,8.28321e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005098467,"about_ca_system_score_gemma":0.0001169226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005850037,"about_ca_topic_score_gemma":0.000003724677,"domain_scores_codex":[0.9990436,0.00008986834,0.0003559934,0.0001614998,0.0002171396,0.0001318421],"domain_scores_gemma":[0.9990501,0.0001347592,0.0003544164,0.00004605946,0.0001027191,0.0003118943],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.03613214,0.0006476722,0.09659808,0.0003987784,0.0003499858,0.0007172681,0.007920749,0.0008518498,0.8365583,0.000008143659,0.0004110245,0.01940594],"study_design_scores_gemma":[0.01732449,0.009920655,0.05828787,0.0007077948,0.001652786,0.0001446846,0.001047553,0.00208393,0.9082902,0.0000438328,0.0002641188,0.0002320977],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9861256,0.00144923,0.01107316,0.0005530075,0.0001587255,0.0003548064,0.0002415063,0.00001924711,0.00002468105],"genre_scores_gemma":[0.9810295,0.01567252,0.002772442,0.000270741,0.0001391261,0.00002871863,0.000068502,0.00001744736,0.000001073874],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07173182,"threshold_uncertainty_score":0.4057255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008587585776514325,"score_gpt":0.2440015341597473,"score_spread":0.235413948383233,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}