{"id":"W3023437134","doi":"10.1101/2020.05.07.082263","title":"VolcaNoseR – a web app for creating, exploring, labeling and sharing volcano plots","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Dalhousie University","keywords":"Plot (graphics); Measure (data warehouse); Web application; Identification (biology); Data sharing; Transparency (behavior)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003200094,0.003051124,0.002186245,0.003504802,0.0006177712,0.002459412,0.003296418,0.001841645,0.08897492],"category_scores_gemma":[0.008310212,0.001475106,0.002497071,0.001496648,0.0007941369,0.003418465,0.005112614,0.002110025,0.04627633],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004958832,"about_ca_system_score_gemma":0.0007886649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001035272,"about_ca_topic_score_gemma":0.001204402,"domain_scores_codex":[0.9983713,0.0003247104,0.0001690677,0.0003661382,0.0005866712,0.000182137],"domain_scores_gemma":[0.9940609,0.003622395,0.0003938437,0.0008523724,0.0005915354,0.0004788121],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0024985,0.0003399684,0.003557894,0.005335621,0.0007481007,0.0025649,0.00139307,0.00245235,0.02581803,0.005268319,0.7960519,0.1539714],"study_design_scores_gemma":[0.001850017,0.0004320462,0.01773214,0.002177809,0.0004476252,0.003073976,0.0007762254,0.0584115,0.05516949,0.03750809,0.8210954,0.001325729],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004530977,0.000819777,0.152392,0.0004987187,0.0003392838,0.0005995512,0.04116754,0.7926946,0.006957613],"genre_scores_gemma":[0.0816139,0.002110712,0.4380145,0.002932574,0.0005119143,0.005917291,0.1267183,0.3178866,0.02429417],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.08897492,"threshold_uncertainty_score":0.2976508,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03602986945499646,"score_gpt":0.2563643955571732,"score_spread":0.2203345261021767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}