{"id":"W3023437134","doi":"10.1101/2020.05.07.082263","title":"VolcaNoseR – a web app for creating, exploring, labeling and sharing volcano plots","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Dalhousie University","keywords":"Plot (graphics); Measure (data warehouse); Web application; Identification (biology); Data sharing; Transparency (behavior)","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002504991,0.0007189992,0.0007013213,0.0001283464,0.000380936,0.0003088104,0.0007889653,0.000552332,0.00005612113],"category_scores_gemma":[0.0003003736,0.0008630468,0.0001883025,0.0002423075,0.0001051662,0.0001995614,0.00118947,0.001003786,0.00001264049],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002543651,"about_ca_system_score_gemma":0.0003215919,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005253161,"about_ca_topic_score_gemma":0.000003328154,"domain_scores_codex":[0.9966838,0.00001304671,0.000679611,0.001694065,0.0002660438,0.0006634076],"domain_scores_gemma":[0.9972578,0.00009581372,0.0005628892,0.001331656,0.0003515033,0.0004003794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003567999,0.00006162641,0.003588548,0.001459469,0.0001212113,0.000008659852,0.00002150709,0.00003775761,0.9899428,0.004548467,0.0001627708,0.00001146313],"study_design_scores_gemma":[0.0007465869,0.00003510581,0.000443731,0.001104165,0.0001991379,3.104353e-8,0.00001067591,0.005545977,0.9524347,0.0001584343,0.03796624,0.001355254],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9605005,0.001295356,0.03178089,0.0004511318,0.0002552939,0.001649031,0.001139515,0.002784731,0.0001434843],"genre_scores_gemma":[0.8289692,0.000890023,0.1629239,0.0001540854,0.0008071401,0.005858313,0.000002688611,0.0003568191,0.00003780451],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1315314,"threshold_uncertainty_score":0.999382,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03602986945499646,"score_gpt":0.2563643955571732,"score_spread":0.2203345261021767,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}