{"id":"W3023519538","doi":"10.17504/protocols.io.w95fh86","title":"Nsil1-Msp1 RAD-digest Detailed Protocol v2","year":2019,"lang":"en","type":"preprint","venue":"","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Fisheries and Oceans Canada; Dalhousie University","funders":"","keywords":"Protocol (science); Genotyping; Ion semiconductor sequencing; Computational biology; DNA sequencing; Computer science; Biology; Physics; Genetics; Medicine; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00308621,0.002977461,0.003461185,0.003630216,0.002907834,0.002270417,0.004067363,0.001453117,0.118319],"category_scores_gemma":[0.005285614,0.002689723,0.001770825,0.002468565,0.001238565,0.001434128,0.002089115,0.005605957,0.1719703],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008395815,"about_ca_system_score_gemma":0.00191437,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001844527,"about_ca_topic_score_gemma":0.003751129,"domain_scores_codex":[0.9964526,0.0007228332,0.0004279605,0.001122829,0.0007650356,0.0005087457],"domain_scores_gemma":[0.9974878,0.0005074056,0.0001425555,0.001139545,0.0005211172,0.0002016334],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001969554,0.000536823,0.002333421,0.005196695,0.0002752941,0.0006758136,0.001039253,0.0008687493,0.6792285,0.005470604,0.2385449,0.06386045],"study_design_scores_gemma":[0.0001928921,0.0003520279,0.003677729,0.00041347,0.0002144868,0.0009476733,0.0002225869,0.001408992,0.2024117,0.003298223,0.7866584,0.0002017815],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.03534983,0.007125866,0.5424564,0.001639591,0.003222349,0.01861106,0.2881061,0.05374191,0.04974693],"genre_scores_gemma":[0.03550714,0.004060276,0.2206647,0.001196485,0.0003909247,0.0197627,0.6152307,0.01555877,0.08762837],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.118319,"threshold_uncertainty_score":0.3958164,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01631762500890964,"score_gpt":0.2742684973743347,"score_spread":0.2579508723654251,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}