{"id":"W3023840458","doi":"10.1186/s40168-020-00804-1","title":"The neovaginal microbiome of transgender women post-gender reassignment surgery","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Sexual function and dysfunction studies","field":"Medicine","cited_by":65,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Mental Health; National Institute of Allergy and Infectious Diseases; National Institute of Child Health and Human Development; Canadian Institutes of Health Research; National Institutes of Health; International Maternal Pediatric Adolescent AIDS Clinical Trials Network","keywords":"Roseburia; Biology; Prevotella; Microbiome; Peptostreptococcus; Bacterial vaginosis; Gynecology; Zoology; Lactobacillus; Physiology; Internal medicine; Gastroenterology; Microbiology; Bacteroides; Bioinformatics; Genetics; Medicine; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002892581,0.000200521,0.000407679,0.0001161005,0.0001769607,0.00002220881,0.0000876763,0.00007363383,0.0008196626],"category_scores_gemma":[0.000061456,0.0001345954,0.0001820913,0.0004878014,0.0002029181,0.00004872641,0.00004396213,0.0001462318,0.0002312833],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009976653,"about_ca_system_score_gemma":0.0001314591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001507823,"about_ca_topic_score_gemma":8.673068e-7,"domain_scores_codex":[0.9986084,0.00005901881,0.0004461074,0.0003070734,0.0001995962,0.0003798723],"domain_scores_gemma":[0.9990836,0.000151763,0.0001083936,0.0002502076,0.0002039226,0.0002020677],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001039267,0.0001298994,0.00191659,0.0001502902,0.0004335266,0.00001594267,0.003042276,0.00000108709,0.9161476,0.00005251819,0.07450412,0.002566833],"study_design_scores_gemma":[0.002071044,0.0005518906,0.02587882,0.00003247495,0.0001424773,0.0001994393,0.007289554,0.000005748129,0.05733459,0.00001871607,0.9061534,0.0003218245],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9682339,0.002405829,0.001144507,0.02354224,0.001211042,0.000564566,0.0001169505,0.0001973003,0.002583637],"genre_scores_gemma":[0.987523,0.0001296354,0.0001252102,0.008225585,0.0002207656,0.00003010427,0.00005983266,0.00003401778,0.003651844],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.858813,"threshold_uncertainty_score":0.897473,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06016876579404181,"score_gpt":0.2540563033609474,"score_spread":0.1938875375669055,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}