{"id":"W3025428915","doi":"10.3390/v12050556","title":"External Quality Assessment Program for Next-Generation Sequencing-Based HIV Drug Resistance Testing: Logistical Considerations","year":2020,"lang":"en","type":"article","venue":"Viruses","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"National Institute of Allergy and Infectious Diseases; Public Health Agency; Public Health Agency of Canada","keywords":"External quality assessment; HIV drug resistance; Medical physics; Medicine; Human immunodeficiency virus (HIV); Protocol (science); Consistency (knowledge bases); Genotyping; Computer science; Family medicine; Pathology; Viral load; Antiretroviral therapy; Biology; Alternative medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002221451,0.0001757346,0.0002754955,0.00003942337,0.0002132734,0.0001116069,0.00004357273,0.00004880131,0.0001005958],"category_scores_gemma":[0.001082113,0.000148038,0.00007128619,0.0001343339,0.00008100799,0.0001013624,0.00001544123,0.0001104827,0.00003094987],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000197682,"about_ca_system_score_gemma":0.0009291591,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001392891,"about_ca_topic_score_gemma":0.0001063462,"domain_scores_codex":[0.9986404,0.00008172064,0.0004071782,0.0003562593,0.0002910964,0.0002233733],"domain_scores_gemma":[0.998821,0.0004877722,0.0001083271,0.0001686445,0.0002170415,0.0001972567],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001233266,0.00360104,0.1679796,0.001478699,0.0006441355,0.0005559429,0.002401364,0.0007382407,0.4848655,0.06876807,0.2540167,0.01371748],"study_design_scores_gemma":[0.0253457,0.0016074,0.03538161,0.00120532,0.001796691,0.00004375472,0.001104634,0.1967842,0.434759,0.006155264,0.293268,0.002548421],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.4732502,0.000907652,0.3186167,0.1866392,0.000527796,0.009409346,0.0004168727,0.002091786,0.008140538],"genre_scores_gemma":[0.6175948,0.000002339811,0.3775609,0.003294702,0.0002458247,0.0003846406,0.0001208156,0.00001818081,0.0007777479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.196046,"threshold_uncertainty_score":0.6036813,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.3960619263361445,"score_gpt":0.4096248338800251,"score_spread":0.01356290754388068,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}