{"id":"W3026587252","doi":"10.15252/embr.202050348","title":"Macrophage‐driven nutrient delivery to phagosomal Staphylococcus aureus supports bacterial growth","year":2020,"lang":"en","type":"article","venue":"EMBO Reports","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":false,"ca_institutions":"Western University","funders":"Cystic Fibrosis Canada","keywords":"Staphylococcus aureus; Microbiology; Macrophage; Bacteria; Bacterial growth; Chemistry; Biology; Biochemistry; In vitro","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001180963,0.0002920306,0.0002975211,0.00004191673,0.0001162231,0.00008650939,0.0001381934,0.0002116851,0.0002192488],"category_scores_gemma":[0.0001443287,0.0002886046,0.0001812585,0.0001430304,0.00004953608,0.000009932224,0.0002965189,0.0001157376,0.00004061679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000211726,"about_ca_system_score_gemma":0.0001456655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004915665,"about_ca_topic_score_gemma":0.00001272253,"domain_scores_codex":[0.9979541,0.0000567378,0.0005038261,0.0007844995,0.0002228034,0.000478007],"domain_scores_gemma":[0.998711,0.000005738562,0.0002044572,0.0004317761,0.0001501998,0.0004968511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000299287,0.00005393111,0.001771388,0.00001978117,0.00005449058,0.001189125,0.0001038668,0.00001064411,0.9765129,0.00001329888,0.01940375,0.0005675496],"study_design_scores_gemma":[0.0003449119,0.0006158414,0.002925824,0.00001403342,0.00002874006,0.0001409149,0.00003029803,0.000006503667,0.8544952,0.000009855722,0.1410089,0.0003789701],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962802,0.0001157823,0.0001270481,0.0009519982,0.001288315,0.0003974462,0.00005214243,0.00005375759,0.0007333074],"genre_scores_gemma":[0.9943933,0.00003159847,0.001132411,0.001796679,0.002071408,0.00001345471,0.0003686088,0.00005063306,0.0001418943],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1220177,"threshold_uncertainty_score":0.9999566,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008298292260863564,"score_gpt":0.2175971694430521,"score_spread":0.2092988771821886,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}