{"id":"W3026626577","doi":"10.1101/2020.05.20.106880","title":"A large accessory genome, high recombination rates, and selection of secondary metabolite genes help maintain global distribution and broad host range of the fungal plant pathogen <i>Claviceps purpurea</i>","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant and fungal interactions","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Institute of Food and Agriculture","keywords":"Biology; Genome; Transposable element; Gene; Genetics; Secondary metabolite; Gene duplication; Recombination; Organism; Ecological niche; Genome evolution; Evolutionary biology; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002691615,0.0003434976,0.0002545369,0.0008136736,0.0003141033,0.000593451,0.0003382023,0.0002641774,0.001077199],"category_scores_gemma":[0.0004255269,0.0001731973,0.0003080513,0.000460286,0.0001690802,0.0002758037,0.0005343026,0.0004199776,0.0002126194],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002107815,"about_ca_system_score_gemma":0.0001784669,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000860616,"about_ca_topic_score_gemma":0.001146865,"domain_scores_codex":[0.9998209,0.00002856704,0.00001113085,0.0000580313,0.00004753785,0.00003393945],"domain_scores_gemma":[0.9995831,0.0001021896,0.0001520329,0.00005193449,0.00004307155,0.00006777811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008168867,0.00002767027,0.01248172,0.00004518618,0.00003018797,0.0001327698,0.00005220507,0.0002377436,0.981485,0.00007744882,0.00003169237,0.005316823],"study_design_scores_gemma":[0.00002418552,0.0004482204,0.6044062,0.00005381541,0.0002076639,0.002940226,0.0006387969,0.007089714,0.3763705,0.0003948449,0.00738171,0.00004427136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974716,0.0001719519,0.001616083,0.0000279201,0.000002584425,0.000008833099,0.0002512483,0.00004132714,0.0004084814],"genre_scores_gemma":[0.9968408,0.00009569871,0.001923908,0.000029749,0.000004335611,0.00001090386,0.0008151832,0.00001371051,0.000265661],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001077199,"threshold_uncertainty_score":0.003603637,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01214617552823898,"score_gpt":0.2059758588443046,"score_spread":0.1938296833160656,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}