{"id":"W3027348102","doi":"10.1038/s41564-020-0709-x","title":"The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks","year":2020,"lang":"en","type":"review","venue":"Nature Microbiology","topic":"Viral Infections and Outbreaks Research","field":"Medicine","cited_by":317,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Guelph","funders":"U.S. Department of Health and Human Services; National Institute of Food and Agriculture; Universiteit Leiden; U.S. Department of Agriculture; Leids Universitair Medisch Centrum; Battelle; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Maine Agricultural and Forest Experiment Station; National Institute of General Medical Sciences; National Institute of Allergy and Infectious Diseases; Medical Research Council; National Science Foundation","keywords":"Virus classification; Taxonomy (biology); Biology; Virus; Evolutionary biology; Phylogenetics; Hierarchy; Pandemic; Virology; Ecology; Coronavirus disease 2019 (COVID-19); Genetics; Gene; Infectious disease (medical specialty); Genome; Political science; Disease","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.004017272,0.000997801,0.002085895,0.005879667,0.0007538099,0.004576981,0.001610739,0.00134656,0.00177801],"category_scores_gemma":[0.004729332,0.0004420415,0.001346773,0.005101725,0.00428876,0.008733446,0.002236508,0.004478454,0.001197795],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002993368,"about_ca_system_score_gemma":0.004836143,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00440927,"about_ca_topic_score_gemma":0.0051199,"domain_scores_codex":[0.9981532,0.0007610088,0.0002114916,0.0002571163,0.0004978908,0.0001194129],"domain_scores_gemma":[0.9970124,0.001513125,0.0002993198,0.0001626312,0.0008331981,0.0001794165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008563376,0.00003654013,0.001595583,0.009167229,0.0001530393,0.0001015512,0.0009675203,0.0006883285,0.001329738,0.09035145,0.01854612,0.8769772],"study_design_scores_gemma":[0.00002091487,0.0001636634,0.002778618,0.00770256,0.000163381,0.000844803,0.001351389,0.0007214119,0.0004339302,0.09022533,0.8955179,0.00007612187],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.001097552,0.9794953,0.007908359,0.004346007,0.001228992,0.00003628223,0.0001097435,0.00006195918,0.005715802],"genre_scores_gemma":[0.01703373,0.9590145,0.01619351,0.003682027,0.001587638,0.00008634467,0.0003887236,0.00004396738,0.001969629],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.005879667,"threshold_uncertainty_score":0.02171856,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03141433842411207,"score_gpt":0.3562142247360495,"score_spread":0.3247998863119375,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}