{"id":"W3027716368","doi":"10.1007/978-3-030-42382-7_5","title":"Bacterial Infections and the Respiratory Microbiome","year":2020,"lang":"en","type":"book-chapter","venue":"Respiratory medicine","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children","funders":"","keywords":"Cystic fibrosis; Mucociliary clearance; Cystic fibrosis transmembrane conductance regulator; Immunology; Mucus; Microbiome; Bronchiectasis; Medicine; Lung; Microbiology; Biology; Bioinformatics; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0009402997,0.000582596,0.001383976,0.0004165524,0.0002516232,0.00003460939,0.0002448118,0.0003986221,0.002645692],"category_scores_gemma":[0.001727184,0.0003576599,0.0002142762,0.0001503591,0.003364032,0.00008358868,0.0002575823,0.001355488,0.0003546701],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001942011,"about_ca_system_score_gemma":0.000541488,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001600137,"about_ca_topic_score_gemma":0.00001842431,"domain_scores_codex":[0.997004,0.0001464253,0.0008614603,0.0007560889,0.0008290306,0.0004029874],"domain_scores_gemma":[0.9971067,0.0008048416,0.000341734,0.0008597276,0.0002895283,0.0005974916],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.01112586,0.0001427059,0.0002854346,0.003426361,0.002035925,0.002062916,0.0007012233,0.000001143955,0.164164,0.143455,0.6379431,0.03465632],"study_design_scores_gemma":[0.00816743,0.001878416,0.0003208394,0.001247378,0.0004731286,0.0001224216,0.00002138733,0.000003336139,0.0001947892,0.001216266,0.9860597,0.0002949271],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"other","genre_scores_codex":[0.001973388,0.07151445,0.0001291679,0.02180427,0.002154736,0.004781132,0.0002401975,0.0004375821,0.8969651],"genre_scores_gemma":[0.04020054,0.01301828,0.001013922,0.111994,0.07471547,0.0009494922,0.001001363,0.002114435,0.7549925],"genre_candidate":"other","genre_consensus":"other","teacher_disagreement_score":0.3481166,"threshold_uncertainty_score":0.9998875,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03935126162445212,"score_gpt":0.3105748218925205,"score_spread":0.2712235602680684,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}