{"id":"W3027841425","doi":"10.1186/s40168-020-00844-7","title":"Adaptive matching between phyllosphere bacteria and their tree hosts in a neotropical forest","year":2020,"lang":"en","type":"article","venue":"Microbiome","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":87,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal","funders":"Fonds de recherche du Québec – Nature et technologies; Smithsonian Tropical Research Institute; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Phyllosphere; Biology; Metagenomics; Ecology; Microbial ecology; Host (biology); Microbiome; Mutualism (biology); Phylogenetics; Evolutionary biology; Gene; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003447863,0.0002967943,0.0002368007,0.0009796143,0.0006051623,0.0004889179,0.0003118892,0.000279767,0.0006761901],"category_scores_gemma":[0.0005319589,0.0001566615,0.0001681357,0.0006404946,0.000670795,0.0003821296,0.0005242766,0.0002166114,0.0001224883],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006491112,"about_ca_system_score_gemma":0.0003874508,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01498987,"about_ca_topic_score_gemma":0.02821242,"domain_scores_codex":[0.9998065,0.00002719231,0.000009005647,0.00008680819,0.00002702494,0.00004345527],"domain_scores_gemma":[0.9995444,0.00009199324,0.000155557,0.00003154307,0.00009366595,0.00008266559],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003472954,0.00004703065,0.8985966,0.00009308402,0.0001309945,0.0001967646,0.00124102,0.0004412215,0.09120489,0.0001106009,0.00007984176,0.007510683],"study_design_scores_gemma":[0.000002227199,0.00001624037,0.9986896,0.00000403871,0.000009189454,0.0000477966,0.0003930312,0.0003917602,0.0003112204,0.00004125952,0.00009098089,0.000002683859],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996122,0.0000839822,0.00009225118,0.000008125419,4.302517e-7,0.000002781396,0.00006598091,0.000002859791,0.0001314433],"genre_scores_gemma":[0.9995273,0.00005297418,0.0002228351,0.00001653181,0.000001042698,0.000004717658,0.0001199192,0.000002399335,0.00005213564],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01498987,"threshold_uncertainty_score":0.02980524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0235124232363268,"score_gpt":0.203160983636119,"score_spread":0.1796485603997922,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}