{"id":"W3028228569","doi":"10.1074/mcp.ra119.001769","title":"Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in Aspergillus nidulans","year":2020,"lang":"en","type":"article","venue":"Molecular & Cellular Proteomics","topic":"Fungal and yeast genetics research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of General Medical Sciences; National Science Foundation; National Cancer Institute; Center for Root and Rhizobiome Innovation, University of Nebraska-Lincoln; Fred and Pamela Buffett Cancer Center; National Rice Research Institute, Indian Council of Agricultural Research","keywords":"Aspergillus nidulans; Cell biology; Biology; Phosphoproteomics; Phosphorylation; Transcriptome; Signal transduction; Hippo signaling pathway; Kinase; Cellular stress response; Biochemistry; Protein phosphorylation; Mutant; Protein kinase A; Gene expression; Gene; Fight-or-flight response","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001435238,0.0002417797,0.0003790969,0.0003076706,0.0001768979,0.0002891984,0.0001773723,0.0001714404,0.0002370099],"category_scores_gemma":[0.000109008,0.0001016805,0.0002553801,0.0004877792,0.0001354707,0.0001697212,0.0001743623,0.0002911773,0.0001592143],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002413943,"about_ca_system_score_gemma":0.0001840843,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002141362,"about_ca_topic_score_gemma":0.002537382,"domain_scores_codex":[0.999899,0.000009409394,0.000007918941,0.00002971542,0.00003992353,0.00001403131],"domain_scores_gemma":[0.9999225,0.00001953403,0.0000173837,0.000008929437,0.0000168371,0.00001485773],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008139087,0.00001101071,0.0005090703,0.0000210504,0.00000519698,0.00002675458,0.00001074618,0.0001063009,0.9983553,0.00001679334,0.00001793272,0.0008383782],"study_design_scores_gemma":[0.00001432534,0.0003976582,0.1333894,0.00001283006,0.00005703387,0.0003447938,0.0002118477,0.008173092,0.8558951,0.000174208,0.001295388,0.00003439843],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9882506,0.0009027979,0.004245844,0.00006351058,0.00002002857,0.00004731793,0.005831036,0.00007280018,0.0005660556],"genre_scores_gemma":[0.9827632,0.001034986,0.008769874,0.00008601438,0.0000113555,0.000130918,0.005432548,0.00002674699,0.001744415],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002141362,"threshold_uncertainty_score":0.004257798,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004730529345952274,"score_gpt":0.204726085419998,"score_spread":0.1999955560740457,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}