{"id":"W3028360845","doi":"10.1109/access.2020.2995812","title":"Construction of Duplication Correcting Codes","year":2020,"lang":"en","type":"article","venue":"IEEE Access","topic":"DNA and Biological Computing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"","keywords":"Construct (python library); Palindrome; Extension (predicate logic); Tandem exon duplication; Gene duplication; Code (set theory); Computer science; Mathematics; Algorithm; Discrete mathematics; Combinatorics; Genetics; Biology; Genome; Programming language; Set (abstract data type)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004612614,0.00004636285,0.0000674927,0.000006702154,0.00002954408,0.00001301316,0.0001366638,0.00005319375,0.000007287478],"category_scores_gemma":[0.00007923322,0.00003912812,0.00002986517,0.00007029854,0.00003865431,0.000002728413,0.00005252086,0.0000343795,0.000002206933],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001741145,"about_ca_system_score_gemma":0.00001028612,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007980625,"about_ca_topic_score_gemma":0.000001365094,"domain_scores_codex":[0.9996217,0.00001953884,0.0001105735,0.0001448069,0.0000370977,0.00006622809],"domain_scores_gemma":[0.9997628,0.00000995213,0.00008025399,0.00006808079,0.00005022083,0.00002868741],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003132347,0.000009165341,0.02915595,0.00001415576,0.00000971846,2.263453e-7,0.00001431416,0.0001109396,0.9441542,0.00004139935,0.0002869326,0.02617166],"study_design_scores_gemma":[0.000108195,0.000104824,0.003920702,0.000005155416,0.000004986181,0.000004410617,0.00003124462,0.0004480316,0.9938198,0.00006395057,0.001424865,0.00006384053],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9783893,0.00005493376,0.02034229,0.000158252,0.0001300875,0.00005254982,0.000002924242,0.00001257912,0.0008571072],"genre_scores_gemma":[0.998805,0.00001434589,0.0006146208,0.0003078339,0.0002281128,0.000001985904,0.00001758449,0.000003256869,0.000007265032],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04966559,"threshold_uncertainty_score":0.1595598,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04037929659307958,"score_gpt":0.3040357363686432,"score_spread":0.2636564397755636,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}