{"id":"W3028429016","doi":"10.1101/2020.05.19.103788","title":"AnAms1.0: A high-quality chromosome-scale assembly of a domestic cat <i>Felis catus</i> of American Shorthair breed","year":2020,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Chinese University of Hong Kong","keywords":"Felis catus; Genome; Reference genome; Population; Breed; Genome project; Biology; Annotation; Whole genome sequencing; Computational biology; Genetics; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006113336,0.0008221963,0.0007972327,0.001247804,0.0009727502,0.0007897531,0.0006297415,0.0005944304,0.004032696],"category_scores_gemma":[0.000718116,0.0004733219,0.0008823196,0.001140394,0.0002452343,0.0003750437,0.0007907678,0.000884925,0.002589356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005721803,"about_ca_system_score_gemma":0.00101614,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005678353,"about_ca_topic_score_gemma":0.01038955,"domain_scores_codex":[0.9997818,0.00001641975,0.00001809405,0.00009992973,0.00006198538,0.00002182578],"domain_scores_gemma":[0.9997117,0.0000587113,0.00005150876,0.00003591055,0.00007923369,0.00006293788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005232829,0.00009177258,0.003119179,0.0007936028,0.00009363423,0.0006711736,0.000816692,0.002052243,0.9369,0.001120217,0.01499163,0.03882663],"study_design_scores_gemma":[0.0003212261,0.0006940268,0.1098597,0.0005265594,0.0006487913,0.001610376,0.0008323489,0.0409577,0.5099422,0.001970349,0.3323022,0.0003345314],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6894956,0.002501103,0.150381,0.001043055,0.0005634127,0.0007880645,0.1243702,0.01703858,0.01381894],"genre_scores_gemma":[0.3807972,0.001301753,0.2309936,0.000335231,0.00008313434,0.0008080145,0.363792,0.005475432,0.01641362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005678353,"threshold_uncertainty_score":0.01349074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01255898400786179,"score_gpt":0.2395293731235541,"score_spread":0.2269703891156923,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}