{"id":"W3028573070","doi":"10.1093/infdis/jiaa147","title":"Genomic Epidemiology of Invasive Methicillin-Resistant <i>Staphylococcus aureus</i> Infections Among Hospitalized Individuals in Ontario, Canada","year":2020,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":14,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Sciences Centre; Sinai Health System; Sunnybrook Health Science Centre; Toronto Public Health; Public Health Agency of Canada; University of Toronto; Public Health Ontario","funders":"Public Health Ontario","keywords":"Epidemiology; Methicillin-resistant Staphylococcus aureus; Staphylococcus aureus; Medicine; Molecular epidemiology; Staphylococcal infections; Microbiology; Biology; Internal medicine; Genotype; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004223442,0.0003377832,0.0003264579,0.00199505,0.002052976,0.001086136,0.0009151916,0.0003378501,0.001460292],"category_scores_gemma":[0.001809014,0.0002601381,0.0004332301,0.003922492,0.0008663032,0.0002500108,0.0008124893,0.0003964563,0.0001046032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02565471,"about_ca_system_score_gemma":0.03190818,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.992436,"about_ca_topic_score_gemma":0.9943497,"domain_scores_codex":[0.9991247,0.00004476204,0.00006222251,0.0001742273,0.0003046383,0.0002894716],"domain_scores_gemma":[0.99751,0.0001199379,0.0007820235,0.0000597593,0.0009693779,0.0005590159],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002996587,0.000007545982,0.9956108,0.00004116976,0.0000197422,0.00007587299,0.0006315903,0.00008975809,0.00041159,0.00006722557,0.0005445142,0.002470152],"study_design_scores_gemma":[0.000001710657,0.00001184306,0.9986375,0.00002745855,0.000009625857,0.00005303308,0.00066323,0.0001176887,0.00003675817,0.00001248229,0.0004248396,0.000003833096],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9907466,0.001036995,0.0002561726,0.000434664,0.00001095222,0.00007221966,0.005258956,0.00001758357,0.002165814],"genre_scores_gemma":[0.997353,0.0005477249,0.0002758008,0.0001138018,0.000005804403,0.00001755127,0.001249311,0.000004114212,0.0004329153],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02565471,"threshold_uncertainty_score":0.1861387,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0202792653482835,"score_gpt":0.2618601995770563,"score_spread":0.2415809342287728,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}