{"id":"W3028636037","doi":"10.1093/biolre/ioaa089","title":"Patients who failed to conceive following an in vitro fertilization cycle can be clustered into different failure causes using gene expression hierarchical analysis†","year":2020,"lang":"en","type":"article","venue":"Biology of Reproduction","topic":"Reproductive Biology and Fertility","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Fertility Centre; Quebec - Clinical Research Organization in Cancer; Université Laval","funders":"","keywords":"Biology; Follicular phase; Gene expression; Andrology; Population; In vitro fertilisation; Follicle; Gene; Hierarchical clustering; Pregnancy; Bioinformatics; Endocrinology; Cluster analysis; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002730987,0.0001949408,0.0006560694,0.0002433949,0.00009464639,0.000005109197,0.00009574538,0.0002315159,0.00001183882],"category_scores_gemma":[0.0009840685,0.0001581039,0.0001426604,0.000587916,0.0001466936,0.0001031859,0.00008615308,0.0002018747,7.050784e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001206011,"about_ca_system_score_gemma":0.00004588821,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001958511,"about_ca_topic_score_gemma":0.00008976867,"domain_scores_codex":[0.9975465,0.0004431427,0.0004982085,0.001157484,0.0001325253,0.000222157],"domain_scores_gemma":[0.9988938,0.0000263827,0.0001749962,0.0005613368,0.000184914,0.0001585978],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.003529713,0.0001517717,0.3863699,0.0000203562,0.0001158658,0.000001295968,0.001585475,0.0001673838,0.606797,0.000001184484,0.000004059736,0.001255984],"study_design_scores_gemma":[0.0006519123,0.0004210227,0.4901794,0.00001504738,0.0001339718,7.312547e-7,0.0001738066,0.0005808853,0.5076663,0.00004521885,0.00003731899,0.00009432586],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935804,0.0001757975,0.002888065,0.002373654,0.0002239927,0.0006968789,0.00001609474,0.00004221794,0.000002899247],"genre_scores_gemma":[0.9964557,0.000008832701,0.002549726,0.0001788767,0.0002223779,0.00002152381,0.0005451377,0.00001289089,0.000004886218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1038096,"threshold_uncertainty_score":0.6447291,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03473591561729429,"score_gpt":0.3108250269378016,"score_spread":0.2760891113205073,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}