{"id":"W3031040698","doi":"10.1186/s42523-020-00028-6","title":"Composition and co-occurrence patterns of the microbiota of different niches of the bovine mammary gland: potential associations with mastitis susceptibility, udder inflammation, and teat-end hyperkeratosis","year":2020,"lang":"en","type":"article","venue":"Animal Microbiome","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary; McMaster University; University of Manitoba","funders":"Dairy Farmers of Manitoba","keywords":"Udder; Mastitis; Biology; Ecological niche; Dysbiosis; Microbiome; Mammary gland; Microbiology; Colonization; Zoology; Ecology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003783568,0.0002244818,0.0004147263,0.001331421,0.0002939126,0.0008022732,0.0001604577,0.0003253536,0.0009467044],"category_scores_gemma":[0.0007427283,0.0001513434,0.0003104687,0.0009579326,0.000249558,0.0003526181,0.0005717648,0.0002647258,0.0001481142],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000254831,"about_ca_system_score_gemma":0.0001816261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0016424,"about_ca_topic_score_gemma":0.002533818,"domain_scores_codex":[0.9995426,0.00007624428,0.00003714181,0.0001576709,0.00008347046,0.0001027923],"domain_scores_gemma":[0.9991683,0.0001268543,0.000448719,0.00003583457,0.00008510485,0.0001352563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000466014,0.00004968432,0.910232,0.0001255473,0.0001619012,0.0001407485,0.000319443,0.0002092123,0.08105218,0.00005661457,0.00006618232,0.00712044],"study_design_scores_gemma":[0.000002503628,0.00006466209,0.9968124,0.00001256741,0.00004352728,0.0002653503,0.000286506,0.0008807645,0.001328205,0.00005973562,0.0002381987,0.000005491535],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987037,0.0006326138,0.0003112114,0.00001560024,0.000001780142,0.000004120994,0.0001860388,0.000004609743,0.0001403031],"genre_scores_gemma":[0.9990888,0.0001695968,0.0004367012,0.00001048402,0.000003689445,0.00000640013,0.0002114554,0.000002466658,0.00007053265],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0016424,"threshold_uncertainty_score":0.003265679,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01421175075922397,"score_gpt":0.2053143900442258,"score_spread":0.1911026392850018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}