{"id":"W3031155112","doi":"10.1097/inf.0000000000002714","title":"Pseudomonas aeruginosa Isolates From a Cohort of Mexican Children With Cystic Fibrosis Show Adaptation to a Chronic Phenotype","year":2020,"lang":"en","type":"article","venue":"The Pediatric Infectious Disease Journal","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Medical Research Council; Queen's University; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Queen's University Belfast","keywords":"Pseudomonas aeruginosa; Microbiology; Biology; Broth microdilution; Tobramycin; Phenotype; Genotype; Cystic fibrosis; Colistin; Virulence; Antibiotic resistance; Serotype; Antibiotics; Medical microbiology; Gentamicin; Bacteria; Minimum inhibitory concentration; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001026654,0.0001651273,0.0001707377,0.00003907952,0.0001730377,0.00006187718,0.0001476145,0.00005678667,0.00004191924],"category_scores_gemma":[0.0001040864,0.0001138814,0.0001062304,0.0001984579,0.00004017959,0.000008524951,0.00006722588,0.0001448034,0.000009653006],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002687495,"about_ca_system_score_gemma":0.0002869956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001467122,"about_ca_topic_score_gemma":0.00003913977,"domain_scores_codex":[0.9990782,0.00009299252,0.0002274233,0.0002218837,0.0001628831,0.0002166891],"domain_scores_gemma":[0.9991872,0.00002482648,0.0001949315,0.0001762313,0.000112775,0.0003040639],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001336445,0.0001033374,0.6421446,0.00002455489,0.0004064729,0.00000663499,0.0003765388,0.004975234,0.3481865,0.0000083258,0.0009303518,0.001500965],"study_design_scores_gemma":[0.002264378,0.002955667,0.978056,0.00003708354,0.0018742,0.000129169,0.00009730778,0.001056573,0.01242297,0.00008941763,0.0003696482,0.0006476155],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963911,0.0007783528,0.001857451,0.0004656509,0.000114906,0.0002517924,0.00009946222,0.00001497916,0.00002626867],"genre_scores_gemma":[0.9963565,0.0002678141,0.0003247459,0.0003386668,0.002623679,0.000005145766,0.00005516663,0.00002365205,0.000004558395],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3359113,"threshold_uncertainty_score":0.4643949,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005152150975359472,"score_gpt":0.1981524384006595,"score_spread":0.1930002874253,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}